DMR 25782 chr1:204120301-204120750 (450bp)

DMR Stats
Positionchr1:204120301-204120750 (View on UCSC)
Width450bp
Genomic Contextexon
Nearest GenesETNK2 (0bp away)
ANODEV p-value3.123106272e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25782 ETNK2 2421 uc001han.4 chr1 204100190 204121307 - 450 100.0 0.07 0 0.0 E1 (6.22), I1 (93.78), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25782 ETNK2 2421 uc001hao.4 chr1 204100190 204121307 - 450 100.0 0.09 0 0.0 E1 (6.22), I1 (93.78), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25782 ETNK2 2421 uc010pqs.2 chr1 204100190 204121307 - 450 100.0 0.05 0 0.0 E1 (6.22), I1 (93.78), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
25782 ETNK2 2421 uc010pqt.2 chr1 204100190 204121307 - 450 100.0 0.05 0 0.0 E1 (6.22), I1 (93.78), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25782 chr1 204119666 204121455 wgEncodeRegDnaseClusteredV2 106 score:1000, srow:95689
25782 chr1 204120297 204121235 wgEncodeRegTfbsClusteredV3 EZH2 score:720, expCount:2, expNums:38,43, expScores:524,470, srow:350264
25782 chr1 204120430 204120443 tfbsConsSites V$GATA1_02 score:864, zScore:2.27, srow:422118
25782 chr1 204120434 204120445 tfbsConsSites V$MYOD_01 score:924, zScore:2.29, srow:422119
25782 chr1 204120436 204120449 tfbsConsSites V$P300_01 score:865, zScore:2.07, srow:422120
25782 chr1 204120474 204120485 tfbsConsSites V$LMO2COM_01 score:938, zScore:1.98, srow:422121
25782 chr1 204120475 204120484 tfbsConsSites V$MYOD_Q6 score:993, zScore:2.17, srow:422122
25782 chr1 204120691 204120700 tfbsConsSites V$GATA1_01 score:961, zScore:2.1, srow:422123
25782 chr1 204120691 204120700 tfbsConsSites V$GATA2_01 score:967, zScore:2.23, srow:422124
25782 chr1 204120360 204120369 phastConsElements100way lod=32 score:337, srow:722841
25782 chr1 204120440 204120452 phastConsElements100way lod=35 score:345, srow:722842
25782 chr1 204120474 204120483 phastConsElements100way lod=42 score:363, srow:722843
25782 chr1 204120645 204120648 phastConsElements100way lod=17 score:274, srow:722844
25782 chr1 204120680 204120694 phastConsElements100way lod=35 score:345, srow:722845
25782 chr1 204120720 204120737 phastConsElements100way lod=137 score:481, srow:722846
25782 chr1 204120742 204120782 phastConsElements100way lod=260 score:544, srow:722847
25782 chr1 204120399 204121109 cpgIsland CpG: 61 length:711, cpgNum:61, gcNum:472, perCpg:17.2, perGc:66.4, obsExp:0.78, srow:2079
25782 chr1 204118399 204120398 cpgShore — values(x.gr)[overs$srow, ]:3831
  • 18 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25782 cellmeth_recounts PrEC: 1, LNCaP: 1274, DU145: 10
25782 cellmeth_diffreps_PrECvsLNCaP A=2, B=1222, Length=1000, Event=Up, log2FC=9.26, padj=0
25782 cellmeth_diffreps_LNCaPvsDU145 A=1315.99, B=7.48, Length=1120, Event=Down, log2FC=-7.46, padj=0
25782 cellexp id=ENSG00000143845, name=ETNK2, PrEC=1080, str=204, LNCaP=76, str=34, DU145=396, str=283
25782 tcgameth site:cg02990368, B=0.21, L=0.58, H=0.54
25782 tcgameth site:cg12638737, B=0.25, L=0.58, H=0.53
25782 tcgaexp gene=ETNK2, entrez=55224, pos=chr1:204100190-204121307(-), B=1373, L=722, M=616, H=498