DMR 25808 chr1:214153151-214153550 (400bp)

DMR Stats
Positionchr1:214153151-214153550 (View on UCSC)
Width400bp
Genomic Contextintergenic
Nearest GenesPROX1 (7727bp away)
ANODEV p-value0.00791583450306
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25808 chr1 214153026 214153595 wgEncodeRegDnaseClusteredV2 24 score:502, srow:102132
25808 chr1 214152833 214153448 wgEncodeRegTfbsClusteredV3 CHD1 score:278, expCount:1, expNums:4, expScores:278, srow:377029
25808 chr1 214152847 214153456 wgEncodeRegTfbsClusteredV3 SP4 score:235, expCount:1, expNums:155, expScores:235, srow:377030
25808 chr1 214152987 214153796 wgEncodeRegTfbsClusteredV3 SUZ12 score:163, expCount:1, expNums:578, expScores:163, srow:377031
25808 chr1 214153012 214153681 wgEncodeRegTfbsClusteredV3 RBBP5 score:357, expCount:1, expNums:8, expScores:357, srow:377032
25808 chr1 214153034 214153309 wgEncodeRegTfbsClusteredV3 EGR1 score:185, expCount:1, expNums:138, expScores:185, srow:377033
25808 chr1 214153038 214153637 wgEncodeRegTfbsClusteredV3 CTBP2 score:233, expCount:1, expNums:348, expScores:233, srow:377034
25808 chr1 214153086 214153371 wgEncodeRegTfbsClusteredV3 CTCF score:421, expCount:5, expNums:5,137,609,659,688, expScores:421,165,332,173,405, srow:377035
25808 chr1 214153086 214153375 wgEncodeRegTfbsClusteredV3 ZNF143 score:157, expCount:1, expNums:361, expScores:157, srow:377036
25808 chr1 214153245 214153764 wgEncodeRegTfbsClusteredV3 SIN3A score:181, expCount:1, expNums:357, expScores:181, srow:377037
25808 chr1 214153215 214153668 cpgIsland CpG: 42 length:454, cpgNum:42, gcNum:318, perCpg:18.5, perGc:70, obsExp:0.78, srow:2168
25808 chr1 214151215 214153214 cpgShore — values(x.gr)[overs$srow, ]:4005
  • 12 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25808 cellmeth_recounts PrEC: 1, LNCaP: 0, DU145: 32
25808 cellmeth_diffreps_PrECvsDU145 A=1, B=28, Length=440, Event=Up, log2FC=4.81, padj=1.65281660542259e-06
25808 cellmeth_diffreps_LNCaPvsDU145 A=0, B=21.51, Length=380, Event=Up, log2FC=Inf, padj=1.19287770819028e-05
25808 cellexp id=ENSG00000230461, name=PROX1-AS1, PrEC=6, str=0, LNCaP=1, str=0, DU145=12, str=8
25808 tcgameth site:cg02892286, B=0.16, L=0.36, H=0.42
25808 tcgameth site:cg24244374, B=0.37, L=0.55, H=0.55
25808 tcgameth site:cg25742246, B=0.1, L=0.37, H=0.38
25808 tcgameth site:cg26926612, B=0.29, L=0.6, H=0.52