DMR 25809 chr1:214158701-214158900 (200bp)

DMR Stats
Positionchr1:214158701-214158900 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesPROX1 (2377bp away)
ANODEV p-value0.037853134814
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25809 chr1 214158241 214160215 wgEncodeRegDnaseClusteredV2 63 score:844, srow:102140
25809 chr1 214158373 214159641 wgEncodeRegTfbsClusteredV3 SUZ12 score:222, expCount:2, expNums:358,578, expScores:139,198, srow:377067
25809 chr1 214158448 214160628 wgEncodeRegTfbsClusteredV3 EZH2 score:787, expCount:8, expNums:3,6,15,21,36,38,40,43, expScores:130,366,317,590,323,208,459,329, srow:377068
25809 chr1 214158539 214159138 wgEncodeRegTfbsClusteredV3 CTBP2 score:195, expCount:1, expNums:348, expScores:195, srow:377069
25809 chr1 214158840 214158861 tfbsConsSites V$HEN1_01 score:796, zScore:2.02, srow:445893
25809 chr1 214158826 214158830 phastConsElements100way lod=15 score:262, srow:763790
25809 chr1 214158864 214158874 phastConsElements100way lod=31 score:333, srow:763791
25809 chr1 214158727 214159080 cpgIsland CpG: 40 length:354, cpgNum:40, gcNum:236, perCpg:22.6, perGc:66.7, obsExp:1.02, srow:2170
25809 chr1 214156852 214158726 cpgShore — values(x.gr)[overs$srow, ]:4007
  • 9 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25809 cellmeth_recounts PrEC: 12, LNCaP: 13, DU145: 13
25809 cellexp id=ENSG00000117707, name=PROX1, PrEC=60, str=181, LNCaP=3, str=2, DU145=16, str=2
25809 cellexp id=ENSG00000230461, name=PROX1-AS1, PrEC=6, str=0, LNCaP=1, str=0, DU145=12, str=8
25809 tcgameth site:cg10288510, B=0.29, L=0.32, H=0.4