DMR 25862 chr1:227729451-227729650 (200bp)

DMR Stats
Positionchr1:227729451-227729650 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesZNF678 (21569bp away)
ANODEV p-value0.00212871781358
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25862 chr1 227729466 227729815 wgEncodeRegDnaseClusteredV2 14 score:523, srow:108693
25862 chr1 227729516 227730492 cpgIsland CpG: 100 length:977, cpgNum:100, gcNum:718, perCpg:20.5, perGc:73.5, obsExp:0.76, srow:2270
25862 chr1 227727516 227729515 cpgShore — values(x.gr)[overs$srow, ]:4186
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25862 cellmeth_recounts PrEC: 3, LNCaP: 66, DU145: 5
25862 cellmeth_diffreps_PrECvsLNCaP A=4, B=214, Length=1280, Event=Up, log2FC=5.74, padj=0
25862 cellmeth_diffreps_LNCaPvsDU145 A=228.78, B=9.35, Length=1240, Event=Down, log2FC=-4.61, padj=0
25862 tcgameth site:cg26424645, B=0.37, L=0.59, H=0.54