DMR 25868 chr1:228246551-228247200 (650bp)

DMR Stats
Positionchr1:228246551-228247200 (View on UCSC)
Width650bp
Genomic Context3' end
Nearest GenesWNT3A (0bp away)
ANODEV p-value0.00212354790097
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25868 WNT3A 2661 uc001hrp.2 chr1 228194723 228248168 + 650 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (73.23), I4 (6), E5 (0) 4.92
25868 WNT3A 2661 uc001hrq.2 chr1 228194723 228248972 + 650 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (79.08) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25868 chr1 228246481 228246775 wgEncodeRegDnaseClusteredV2 4 score:272, srow:109052
25868 chr1 228246886 228247175 wgEncodeRegDnaseClusteredV2 12 score:629, srow:109053
25868 chr1 228247186 228247955 wgEncodeRegDnaseClusteredV2 78 score:1000, srow:109054
25868 chr1 228246280 228247306 wgEncodeRegTfbsClusteredV3 EZH2 score:512, expCount:5, expNums:15,21,36,38,40, expScores:302,404,346,210,304, srow:401205
25868 chr1 228246827 228247290 wgEncodeRegTfbsClusteredV3 POLR2A score:243, expCount:1, expNums:78, expScores:243, srow:401206
25868 chr1 228246932 228247527 wgEncodeRegTfbsClusteredV3 ZNF263 score:252, expCount:1, expNums:368, expScores:252, srow:401207
25868 chr1 228246971 228247314 wgEncodeRegTfbsClusteredV3 GABPA score:185, expCount:1, expNums:140, expScores:185, srow:401208
25868 chr1 228246686 228246695 tfbsConsSites V$GATA1_01 score:958, zScore:2.05, srow:475264
25868 chr1 228246686 228246695 tfbsConsSites V$GATA2_01 score:954, zScore:1.98, srow:475265
25868 chr1 228246709 228246715 tfbsConsSites V$NKX25_01 score:1000, zScore:2.58, srow:475266
25868 chr1 228246709 228246727 tfbsConsSites V$HNF4_01 score:838, zScore:2.24, srow:475267
25868 chr1 228246754 228246768 tfbsConsSites V$E47_01 score:858, zScore:1.69, srow:475268
25868 chr1 228246825 228246833 tfbsConsSites V$GATA3_01 score:921, zScore:1.65, srow:475269
25868 chr1 228246875 228246890 tfbsConsSites V$ARNT_01 score:877, zScore:2.37, srow:475270
25868 chr1 228246989 228247000 tfbsConsSites V$AREB6_03 score:898, zScore:2.04, srow:475271
25868 chr1 228247050 228247063 tfbsConsSites V$FAC1_01 score:833, zScore:1.64, srow:475272
25868 chr1 228247073 228247087 tfbsConsSites V$E2F_01 score:758, zScore:1.68, srow:475273
25868 chr1 228247079 228247093 tfbsConsSites V$ISRE_01 score:781, zScore:1.68, srow:475274
25868 chr1 228247110 228247121 tfbsConsSites V$CREBP1_Q2 score:882, zScore:2.42, srow:475275
25868 chr1 228247110 228247121 tfbsConsSites V$CREB_Q2 score:896, zScore:2.55, srow:475276
25868 chr1 228247119 228247129 tfbsConsSites V$TGIF_01 score:897, zScore:1.85, srow:475277
25868 chr1 228247123 228247136 tfbsConsSites V$P300_01 score:849, zScore:1.8, srow:475278
25868 chr1 228247130 228247145 tfbsConsSites V$AHRARNT_01 score:848, zScore:2.03, srow:475279
25868 chr1 228247149 228247164 tfbsConsSites V$E47_02 score:932, zScore:2.56, srow:475280
25868 chr1 228246726 228246726 cosmic COSM1339435 srow:113775
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  • 25 of 64 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25868 cellmeth_recounts PrEC: 77, LNCaP: 348, DU145: 12
25868 cellmeth_diffreps_PrECvsLNCaP A=75, B=235, Length=640, Event=Up, log2FC=1.65, padj=0
25868 cellmeth_diffreps_PrECvsDU145 A=115, B=9, Length=760, Event=Down, log2FC=-3.68, padj=0
25868 cellmeth_diffreps_LNCaPvsDU145 A=308.95, B=8.42, Length=1120, Event=Down, log2FC=-5.2, padj=0
25868 cellexp id=ENSG00000154342, name=WNT3A, PrEC=0, str=14, LNCaP=1, str=0, DU145=10, str=5
25868 tcgameth site:cg09075558, B=0.5, L=0.57, H=0.61
25868 tcgameth site:cg09511896, B=0.36, L=0.48, H=0.48
25868 tcgameth site:cg12359809, B=0.49, L=0.63, H=0.63
25868 tcgameth site:cg23663760, B=0.24, L=0.27, H=0.26
25868 tcgaexp gene=WNT3A, entrez=89780, pos=chr1:228194723-228248972(+), B=193, L=87, M=92, H=58