DMR 25907 chr1:234041201-234041800 (600bp)

DMR Stats
Positionchr1:234041201-234041800 (View on UCSC)
Width600bp
Genomic Contextexon
Nearest GenesSLC35F3 (0bp away)
ANODEV p-value2.76436679896e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25907 SLC35F3 2722 uc001hvy.1 chr1 234040679 234460262 + 600 100.0 0.01 0 0.0 E1 (0), I1 (12.33), E2 (38.33), I2 (49.5), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25907 chr1 234041361 234042035 wgEncodeRegDnaseClusteredV2 28 score:305, srow:113048
25907 chr1 234040684 234041593 wgEncodeRegTfbsClusteredV3 EZH2 score:386, expCount:1, expNums:6, expScores:386, srow:413675
25907 chr1 234041279 234041291 tfbsConsSites V$RORA1_01 score:886, zScore:2.01, srow:480560
25907 chr1 234041281 234041301 tfbsConsSites V$PPARG_01 score:729, zScore:1.73, srow:480561
25907 chr1 234041286 234041296 tfbsConsSites V$SREBP1_02 score:815, zScore:1.73, srow:480562
25907 chr1 234041287 234041302 tfbsConsSites V$ELK1_01 score:876, zScore:2.32, srow:480563
25907 chr1 234041290 234041299 tfbsConsSites V$CETS1P54_01 score:962, zScore:2.08, srow:480564
25907 chr1 234041290 234041303 tfbsConsSites V$ATF_01 score:854, zScore:2.2, srow:480565
25907 chr1 234041291 234041302 tfbsConsSites V$CREBP1_Q2 score:875, zScore:2.3, srow:480566
25907 chr1 234041292 234041306 tfbsConsSites V$TAXCREB_01 score:901, zScore:3.88, srow:480567
25907 chr1 234041293 234041300 tfbsConsSites V$CREBP1CJUN_01 score:912, zScore:1.91, srow:480568
25907 chr1 234041343 234041352 tfbsConsSites V$NKX22_01 score:946, zScore:2.94, srow:480569
25907 chr1 234041378 234041394 tfbsConsSites V$YY1_01 score:861, zScore:1.7, srow:480570
25907 chr1 234041420 234041431 tfbsConsSites V$PAX4_03 score:908, zScore:1.71, srow:480571
25907 chr1 234041431 234041445 tfbsConsSites V$PBX1_02 score:813, zScore:2, srow:480572
25907 chr1 234041461 234041475 tfbsConsSites V$CDPCR3_01 score:802, zScore:1.99, srow:480573
25907 chr1 234041464 234041481 tfbsConsSites V$RFX1_02 score:864, zScore:2.52, srow:480574
25907 chr1 234041500 234041512 tfbsConsSites V$IRF1_01 score:838, zScore:2.25, srow:480575
25907 chr1 234041292 234041292 cosmic COSM533141 srow:118398
25907 chr1 234041293 234041293 cosmic COSM1265874 srow:118399
25907 chr1 234041296 234041296 cosmic COSM1265878 srow:118400
25907 chr1 234041319 234041319 cosmic COSM905714 srow:118401
25907 chr1 234041325 234041325 cosmic COSM679026 srow:118402
25907 chr1 234041351 234041351 cosmic COSM1340219 srow:118403
25907 chr1 234041362 234041362 cosmic COSM905715 srow:118404
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  • 25 of 44 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25907 cellmeth_recounts PrEC: 31, LNCaP: 260, DU145: 33
25907 cellmeth_diffreps_PrECvsLNCaP A=29, B=211, Length=660, Event=Up, log2FC=2.86, padj=0
25907 cellmeth_diffreps_LNCaPvsDU145 A=226.64, B=23.39, Length=660, Event=Down, log2FC=-3.28, padj=0
25907 cellexp id=ENSG00000183780, name=SLC35F3, PrEC=320, str=4139, LNCaP=6, str=3, DU145=949, str=1046
25907 tcgameth site:cg14009098, B=0.21, L=0.55, H=0.5
25907 tcgaexp gene=SLC35F3, entrez=148641, pos=chr1:234040679-234460262(+), B=81, L=148, M=133, H=142