DMR 25933 chr1:244094651-244095050 (400bp)
| DMR Stats | |
|---|---|
| Position | chr1:244094651-244095050 (View on UCSC) |
| Width | 400bp |
| Genomic Context | intron |
| Nearest Genes | LOC339529 (0bp away) |
| ANODEV p-value | 0.000160334753682 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25933 | LOC339529 | 2788 | uc001iac.3 | chr1 | 244080704 | 244210619 | + | 400 | 100.0 | 0.01 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25933 | chr1 | 244094441 | 244094850 | wgEncodeRegDnaseClusteredV2 | 26 | score:1000, srow:117332 |
| 25933 | chr1 | 244094861 | 244095055 | wgEncodeRegDnaseClusteredV2 | 3 | score:257, srow:117333 |
| 25933 | chr1 | 244094647 | 244094970 | wgEncodeRegTfbsClusteredV3 | BACH1 | score:171, expCount:1, expNums:341, expScores:171, srow:429870 |
| 25933 | chr1 | 244094815 | 244094843 | tfbsConsSites | V$MYOGNF1_01 | score:749, zScore:1.91, srow:494714 |
| 25933 | chr1 | 244094825 | 244094832 | tfbsConsSites | V$STAT1_03 | score:1000, zScore:2.01, srow:494715 |
| 25933 | chr1 | 244094700 | 244094713 | phastConsElements100way | lod=20 | score:290, srow:851788 |
| 25933 | chr1 | 244094729 | 244094743 | phastConsElements100way | lod=64 | score:405, srow:851789 |
| 25933 | chr1 | 244094757 | 244094767 | phastConsElements100way | lod=33 | score:340, srow:851790 |
| 25933 | chr1 | 244094779 | 244094784 | phastConsElements100way | lod=15 | score:262, srow:851791 |
| 25933 | chr1 | 244094801 | 244094827 | phastConsElements100way | lod=84 | score:432, srow:851792 |
| 25933 | chr1 | 244094756 | 244095117 | cpgIsland | CpG: 26 | length:362, cpgNum:26, gcNum:236, perCpg:14.4, perGc:65.2, obsExp:0.68, srow:2412 |
| 25933 | chr1 | 244092756 | 244094755 | cpgShore | — | values(x.gr)[overs$srow, ]:4449 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25933 | cellmeth_recounts | PrEC: 4, LNCaP: 4, DU145: 1 |  |
| 25933 | cellexp | id=ENSG00000226828, name=RP11-278H7.1, PrEC=0, str=0, LNCaP=2, str=0, DU145=1, str=0 |  |
| 25933 | tcgameth | site:cg00823843, B=0.41, L=0.62, H=0.6 |  |
| 25933 | tcgameth | site:cg13808012, B=0.39, L=0.64, H=0.63 |  |
| 25933 | tcgameth | site:cg13939055, B=0.42, L=0.71, H=0.71 |  |