DMR 25940 chr1:246810501-246810650 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:246810501-246810650 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | CNST (0bp away) |
| ANODEV p-value | 0.00723154659439 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25940 | CNST | 2803 | uc001ibo.4 | chr1 | 246729639 | 246811544 | + | 150 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 70.67 |
| 25940 | CNST | 2803 | uc001ibp.3 | chr1 | 246729639 | 246831884 | + | 150 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25940 | chr1 | 246810461 | 246811115 | wgEncodeRegDnaseClusteredV2 | 69 | score:1000, srow:119155 |
| 25940 | chr1 | 246810357 | 246810876 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:176, expCount:1, expNums:357, expScores:176, srow:435336 |
| 25940 | chr1 | 246810367 | 246810811 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:69, expNums:0,5,9,16,18,24,35,37,42,44,48,49,137,174,213,262,463,493,595,597,598,605,609,612,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,657,658,659,660,661,662,663,664,668,669,672,673,674,675,676,677,678,679,680,681,682,684,686,687,688,689, expScores:129,925,230,1000,1000,568,395,1000,824,1000,176,165,886,146,437,267,802,592,841,1000,901,180,593,162,126,627,1000,1000,1000,1000,1000,156,817,338,1000,1000,862,982,1000,1000,1000,945,282,866,1000,1000,882,1000,1000,103,499,316,619,1000,1000,1000,316,363,139,993,360,680,99,1000,601,185,450,1000,384, srow:435337 |
| 25940 | chr1 | 246810427 | 246810770 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:222, expCount:1, expNums:353, expScores:222, srow:435338 |
| 25940 | chr1 | 246810429 | 246810757 | wgEncodeRegTfbsClusteredV3 | MYC | score:236, expCount:2, expNums:624,626, expScores:215,236, srow:435339 |
| 25940 | chr1 | 246810431 | 246810870 | wgEncodeRegTfbsClusteredV3 | CBX3 | score:255, expCount:1, expNums:211, expScores:255, srow:435340 |
| 25940 | chr1 | 246810454 | 246810743 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:224, expCount:1, expNums:361, expScores:224, srow:435341 |
| 25940 | chr1 | 246810459 | 246810716 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:8, expNums:149,193,231,264,280,355,466,529, expScores:1000,209,189,803,119,991,793,142, srow:435342 |
| 25940 | chr1 | 246810471 | 246810726 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:255, expCount:1, expNums:246, expScores:255, srow:435343 |
| 25940 | chr1 | 246810491 | 246810512 | tfbsConsSites | V$OLF1_01 | score:800, zScore:1.77, srow:500052 |
| 25940 | chr1 | 246810549 | 246810569 | tfbsConsSites | V$STAT1_01 | score:756, zScore:1.68, srow:500053 |
| 25940 | chr1 | 246810501 | 246810501 | cosmic | COSM1492014 | srow:124303 |
| 25940 | chr1 | 246810526 | 246810526 | cosmic | COSM1473741 | srow:124304 |
| 25940 | chr1 | 246810533 | 246810533 | cosmic | COSM906855 | srow:124305 |
| 25940 | chr1 | 246810602 | 246810602 | cosmic | COSM239375 | srow:124306 |
| 25940 | chr1 | 246810608 | 246810608 | cosmic | COSM289918 | srow:124307 |
| 25940 | chr1 | 246810609 | 246810609 | cosmic | COSM906856 | srow:124308 |
| 25940 | chr1 | 246810382 | 246810932 | oreganno | OREG0014367 | id:OREG0014367, srow:2402 |
| 25940 | chr1 | 246810505 | 246810507 | phastConsElements100way | lod=13 | score:247, srow:860451 |
| 25940 | chr1 | 246810560 | 246810570 | phastConsElements100way | lod=24 | score:308, srow:860452 |
| 25940 | chr1 | 246810572 | 246810580 | phastConsElements100way | lod=27 | score:320, srow:860453 |
| 25940 | chr1 | 246810583 | 246810590 | phastConsElements100way | lod=65 | score:407, srow:860454 |
| 25940 | chr1 | 246810617 | 246810633 | phastConsElements100way | lod=65 | score:407, srow:860455 |
| 25940 | chr1 | 246810638 | 246810640 | phastConsElements100way | lod=16 | score:268, srow:860456 |
| 25940 | chr1 | 246810648 | 246810657 | phastConsElements100way | lod=45 | score:370, srow:860457 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25940 | cellmeth_recounts | PrEC: 1, LNCaP: 0, DU145: 3 |  |
| 25940 | cellexp | id=ENSG00000162852, name=CNST, PrEC=1247, str=1541, LNCaP=2771, str=2643, DU145=1998, str=1854 |  |
| 25940 | tcgameth | site:cg10985909, B=0.57, L=0.7, H=0.61 |  |
| 25940 | tcgaexp | gene=CNST, entrez=163882, pos=chr1:246729639-246831884(+), B=1838, L=1764, M=1825, H=2136 |  |