DMR 25942 chr1:246930851-246931050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:246930851-246931050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | SCCPDH (0bp away) |
| ANODEV p-value | 0.000647983211039 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25942 | SCCPDH | 2804 | uc001ibr.3 | chr1 | 246887378 | 246931440 | + | 200 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25942 | chr1 | 246931021 | 246931036 | phastConsElements100way | lod=26 | score:316, srow:860823 |
| 25942 | chr1 | 246931049 | 246931053 | phastConsElements100way | lod=20 | score:290, srow:860824 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25942 | cellmeth_recounts | PrEC: 18, LNCaP: 3, DU145: 0 |  |
| 25942 | cellmeth_diffreps_PrECvsLNCaP | A=27, B=2, Length=380, Event=Down, log2FC=-3.75, padj=2.19527366662844e-05 |  |
| 25942 | cellmeth_diffreps_PrECvsDU145 | A=27, B=0, Length=400, Event=Down, log2FC=-Inf, padj=9.26891362789191e-08 |  |
| 25942 | cellexp | id=ENSG00000143653, name=SCCPDH, PrEC=1068, str=786, LNCaP=2687, str=1953, DU145=4032, str=5487 |  |
| 25942 | tcgaexp | gene=SCCPDH, entrez=51097, pos=chr1:246887378-246931440(+), B=5178, L=5647, M=5844, H=6074 |  |