DMR 25943 chr1:246952151-246953000 (850bp)
| DMR Stats | |
|---|---|
| Position | chr1:246952151-246953000 (View on UCSC) |
| Width | 850bp |
| Genomic Context | promoter |
| Nearest Genes | LOC149134 (0bp away) |
| ANODEV p-value | 8.60571241901e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25943 | LOC149134 | 2805 | uc001ibs.1 | chr1 | 246939315 | 246955685 | + | 850 | 100.0 | 0.01 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (90.35), E4 (9.65), I4 (0.12), E5 (0), I5 (0), E6 (0) | 0.0 |
| 25943 | LOC149134 | 2805 | uc010pyt.1 | chr1 | 246952919 | 246954788 | + | 82 | 9.65 | 0.01 | 1 | 100.0 | E1 (9.65), I1 (0.12), E2 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25943 | chr1 | 246952066 | 246952775 | wgEncodeRegDnaseClusteredV2 | 43 | score:546, srow:119253 |
| 25943 | chr1 | 246952826 | 246953335 | wgEncodeRegDnaseClusteredV2 | 15 | score:385, srow:119254 |
| 25943 | chr1 | 246952227 | 246952676 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:175, expCount:1, expNums:577, expScores:175, srow:435655 |
| 25943 | chr1 | 246952884 | 246952889 | phastConsElements100way | lod=30 | score:330, srow:860943 |
| 25943 | chr1 | 246952891 | 246952893 | phastConsElements100way | lod=30 | score:330, srow:860944 |
| 25943 | chr1 | 246952903 | 246952906 | phastConsElements100way | lod=18 | score:280, srow:860945 |
| 25943 | chr1 | 246952909 | 246952913 | phastConsElements100way | lod=45 | score:370, srow:860946 |
| 25943 | chr1 | 246952918 | 246952919 | phastConsElements100way | lod=29 | score:327, srow:860947 |
| 25943 | chr1 | 246952921 | 246952943 | phastConsElements100way | lod=186 | score:511, srow:860948 |
| 25943 | chr1 | 246952945 | 246952949 | phastConsElements100way | lod=46 | score:373, srow:860949 |
| 25943 | chr1 | 246952951 | 246952960 | phastConsElements100way | lod=24 | score:308, srow:860950 |
| 25943 | chr1 | 246952962 | 246952964 | phastConsElements100way | lod=32 | score:337, srow:860951 |
| 25943 | chr1 | 246952966 | 246952967 | phastConsElements100way | lod=25 | score:312, srow:860952 |
| 25943 | chr1 | 246952975 | 246952979 | phastConsElements100way | lod=45 | score:370, srow:860953 |
| 25943 | chr1 | 246952984 | 246952988 | phastConsElements100way | lod=57 | score:394, srow:860954 |
| 25943 | chr1 | 246952990 | 246952991 | phastConsElements100way | lod=24 | score:308, srow:860955 |
| 25943 | chr1 | 246952993 | 246953006 | phastConsElements100way | lod=103 | score:452, srow:860956 |
| 25943 | chr1 | 246952215 | 246952511 | cpgIsland | CpG: 34 | length:297, cpgNum:34, gcNum:214, perCpg:22.9, perGc:72.1, obsExp:0.91, srow:2437 |
| 25943 | chr1 | 246950215 | 246952214 | cpgShore | — | values(x.gr)[overs$srow, ]:4497 |
| 25943 | chr1 | 246952512 | 246954511 | cpgShore | — | values(x.gr)[overs$srow, ]:4498 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25943 | cellmeth_recounts | PrEC: 26, LNCaP: 50, DU145: 36 |  |
| 25943 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=29, Length=460, Event=Up, log2FC=Inf, padj=1.75665255515394e-08 |  |
| 25943 | cellmeth_diffreps_PrECvsLNCaP | A=39, B=10, Length=300, Event=Down, log2FC=-1.96, padj=0.000735200014583068 |  |
| 25943 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=240, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 25943 | cellmeth_diffreps_PrECvsDU145 | A=39, B=4, Length=380, Event=Down, log2FC=-3.29, padj=8.04360331424773e-07 |  |
| 25943 | cellexp | id=ENSG00000223519, name=KIF28P, PrEC=2, str=2, LNCaP=25, str=21, DU145=13, str=16 |  |
| 25943 | cellexp | id=ENSG00000227953, name=RP11-439E19.3, PrEC=0, str=5, LNCaP=88, str=77, DU145=15, str=17 |  |
| 25943 | tcgameth | site:cg03340119, B=0.15, L=0.48, H=0.46 |  |
| 25943 | tcgameth | site:cg08535928, B=0.19, L=0.68, H=0.65 |  |
| 25943 | tcgameth | site:cg15176829, B=0.26, L=0.62, H=0.63 |  |
| 25943 | tcgameth | site:cg18950481, B=0.68, L=0.79, H=0.74 |  |
| 25943 | tcgameth | site:cg22560020, B=0.93, L=0.96, H=0.96 |  |
| 25943 | tcgaexp | gene=LOC149134, entrez=149134, pos=chr1:246939315-246955685(+), B=61, L=93, M=114, H=179 |  |