DMR 25944 chr1:246958801-246959000 (200bp)

DMR Stats
Positionchr1:246958801-246959000 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesLOC149134 (3115bp away)
ANODEV p-value0.00251190503455
FrequenciesBenign: 3.0 (42.86%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25944 chr1 246958121 246958995 wgEncodeRegDnaseClusteredV2 65 score:1000, srow:119261
25944 chr1 246958616 246958991 wgEncodeRegTfbsClusteredV3 RFX5 score:178, expCount:1, expNums:356, expScores:178, srow:435663
25944 chr1 246958625 246958884 wgEncodeRegTfbsClusteredV3 TCF12 score:135, expCount:1, expNums:159, expScores:135, srow:435664
25944 chr1 246958626 246958901 wgEncodeRegTfbsClusteredV3 USF2 score:325, expCount:1, expNums:360, expScores:325, srow:435665
25944 chr1 246958644 246958953 wgEncodeRegTfbsClusteredV3 EP300 score:152, expCount:1, expNums:145, expScores:152, srow:435666
25944 chr1 246958700 246958873 wgEncodeRegTfbsClusteredV3 USF1 score:838, expCount:1, expNums:161, expScores:838, srow:435667
25944 chr1 246958781 246959030 wgEncodeRegTfbsClusteredV3 TEAD4 score:181, expCount:1, expNums:160, expScores:181, srow:435668
25944 chr1 246958826 246958829 phastConsElements100way lod=12 score:240, srow:860994
25944 chr1 246958834 246958840 phastConsElements100way lod=17 score:274, srow:860995
  • 9 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25944 cellmeth_recounts PrEC: 3, LNCaP: 10, DU145: 5
25944 cellexp id=ENSG00000223519, name=KIF28P, PrEC=2, str=2, LNCaP=25, str=21, DU145=13, str=16
25944 tcgameth site:cg11751688, B=0.47, L=0.64, H=0.64
25944 tcgameth site:cg15139304, B=0.5, L=0.76, H=0.72
25944 tcgameth site:cg23602453, B=0.57, L=0.78, H=0.75