DMR Stats
Positionchr1:2561801-2562550 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesMMEL1 (0bp away)
ANODEV p-value0.00162482701834
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26 MMEL1 112 uc001ajy.2 chr1 2522081 2564481 - 750 100.0 0.41 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26 chr1 2562261 2562515 wgEncodeRegDnaseClusteredV2 2 score:412, srow:1783
26 chr1 2561812 2562141 wgEncodeRegTfbsClusteredV3 MAX score:148, expCount:1, expNums:352, expScores:148, srow:8380
26 chr1 2561837 2562146 wgEncodeRegTfbsClusteredV3 SUZ12 score:112, expCount:1, expNums:358, expScores:112, srow:8381
26 chr1 2561984 2562579 wgEncodeRegTfbsClusteredV3 NFATC1 score:270, expCount:1, expNums:96, expScores:270, srow:8382
26 chr1 2562241 2562596 wgEncodeRegTfbsClusteredV3 BCL3 score:181, expCount:1, expNums:83, expScores:181, srow:8383
26 chr1 2562262 2562617 wgEncodeRegTfbsClusteredV3 NR2C2 score:174, expCount:1, expNums:318, expScores:174, srow:8384
26 chr1 2561056 2563055 cpgShore values(x.gr)[overs$srow, ]:353
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26 cellmeth_recounts PrEC: 1055, LNCaP: 220, DU145: 94
26 cellmeth_diffreps_PrECvsLNCaP A=1588, B=177, Length=980, Event=Down, log2FC=-3.17, padj=0
26 cellmeth_diffreps_PrECvsDU145 A=1588, B=74, Length=980, Event=Down, log2FC=-4.42, padj=0
26 cellmeth_diffreps_LNCaPvsDU145 A=116.53, B=39.29, Length=440, Event=Down, log2FC=-1.57, padj=8.43936837428414e-08
26 cellmeth_diffreps_LNCaPvsDU145 A=60.94, B=20.58, Length=300, Event=Down, log2FC=-1.57, padj=0.000804102224851697
26 cellexp id=ENSG00000142606, name=MMEL1, PrEC=10, str=2, LNCaP=345, str=321, DU145=7, str=4
26 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
26 tcgaexp gene=MMEL1, entrez=79258, pos=chr1:2522081-2564481(-), B=101, L=114, M=131, H=107
26 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305