DMR 26089 chr2:25438701-25439500 (800bp)

DMR Stats
Positionchr2:25438701-25439500 (View on UCSC)
Width800bp
Genomic Contextintergenic
Nearest GenesDNMT3A (16329bp away)
ANODEV p-value0.00018677650311
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26089 chr2 25438706 25438735 wgEncodeRegDnaseClusteredV2 2 score:223, srow:606759
26089 chr2 25438861 25439155 wgEncodeRegDnaseClusteredV2 84 score:1000, srow:606760
26089 chr2 25439221 25439470 wgEncodeRegDnaseClusteredV2 3 score:117, srow:606761
26089 chr2 25438630 25438813 wgEncodeRegTfbsClusteredV3 CTCF score:115, expCount:1, expNums:603, expScores:115, srow:2125832
26089 chr2 25438656 25439482 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:23, expNums:61,62,105,124,131,146,147,206,207,249,306,326,328,330,332,334,336,338,340,583,596,610,619, expScores:1000,993,1000,407,388,233,518,196,430,177,572,745,976,948,963,545,1000,698,935,997,515,125,318, srow:2125833
26089 chr2 25438762 25439117 wgEncodeRegTfbsClusteredV3 TAF7 score:161, expCount:1, expNums:158, expScores:161, srow:2125834
26089 chr2 25438767 25439256 wgEncodeRegTfbsClusteredV3 TAF1 score:286, expCount:1, expNums:157, expScores:286, srow:2125835
26089 chr2 25438801 25439148 wgEncodeRegTfbsClusteredV3 GABPA score:830, expCount:3, expNums:54,91,140, expScores:830,206,343, srow:2125836
26089 chr2 25438815 25439250 wgEncodeRegTfbsClusteredV3 MAZ score:351, expCount:1, expNums:297, expScores:351, srow:2125837
26089 chr2 25438832 25439111 wgEncodeRegTfbsClusteredV3 CREB1 score:213, expCount:1, expNums:47, expScores:213, srow:2125838
26089 chr2 25438835 25439144 wgEncodeRegTfbsClusteredV3 EP300 score:180, expCount:1, expNums:145, expScores:180, srow:2125839
26089 chr2 25438835 25439184 wgEncodeRegTfbsClusteredV3 MAX score:167, expCount:1, expNums:278, expScores:167, srow:2125840
26089 chr2 25438843 25439198 wgEncodeRegTfbsClusteredV3 BCL3 score:203, expCount:1, expNums:83, expScores:203, srow:2125841
26089 chr2 25438867 25439236 wgEncodeRegTfbsClusteredV3 RELA score:259, expCount:1, expNums:325, expScores:259, srow:2125842
26089 chr2 25438870 25439179 wgEncodeRegTfbsClusteredV3 PAX5 score:343, expCount:2, expNums:101,129, expScores:250,343, srow:2125843
26089 chr2 25438878 25439138 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:1000, srow:2125844
26089 chr2 25438880 25439124 wgEncodeRegTfbsClusteredV3 ELF1 score:690, expCount:1, expNums:88, expScores:690, srow:2125845
26089 chr2 25438880 25439203 wgEncodeRegTfbsClusteredV3 YY1 score:171, expCount:1, expNums:128, expScores:171, srow:2125846
26089 chr2 25438882 25439145 wgEncodeRegTfbsClusteredV3 EBF1 score:230, expCount:1, expNums:86, expScores:230, srow:2125847
26089 chr2 25438889 25439112 wgEncodeRegTfbsClusteredV3 ETS1 score:132, expCount:1, expNums:89, expScores:132, srow:2125848
26089 chr2 25438915 25439127 wgEncodeRegTfbsClusteredV3 TCF3 score:610, expCount:1, expNums:117, expScores:610, srow:2125849
26089 chr2 25438949 25439206 wgEncodeRegTfbsClusteredV3 NRF1 score:458, expCount:2, expNums:303,354, expScores:257,458, srow:2125850
26089 chr2 25438960 25439066 wgEncodeRegTfbsClusteredV3 TCF12 score:407, expCount:1, expNums:116, expScores:407, srow:2125851
26089 chr2 25438726 25439276 cpgIsland CpG: 67 length:551, cpgNum:67, gcNum:406, perCpg:24.3, perGc:73.7, obsExp:0.9, srow:14792
26089 chr2 25436726 25438725 cpgShore — values(x.gr)[overs$srow, ]:26595
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Omics Overlaps

Dmrid Omic Set Data Plot
26089 cellmeth_recounts PrEC: 5, LNCaP: 1537, DU145: 3
26089 cellmeth_diffreps_PrECvsLNCaP A=34, B=1395, Length=1600, Event=Up, log2FC=5.36, padj=0
26089 cellmeth_diffreps_LNCaPvsDU145 A=1493.46, B=4.68, Length=1740, Event=Down, log2FC=-8.32, padj=0
26089 tcgameth site:cg10648670, B=0.05, L=0.43, H=0.49
26089 tcgameth site:cg12999579, B=0.68, L=0.75, H=0.75