DMR 26135 chr2:38300651-38303200 (2550bp)

DMR Stats
Positionchr2:38300651-38303200 (View on UCSC)
Width2550bp
Genomic Contextpromoter
Nearest GenesCYP1B1 (0bp away)
ANODEV p-value8.02260147175e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26135 CYP1B1 16241 uc002rqo.2 chr2 38294746 38303323 - 2550 100.0 0.84 0 14.78 E1 (10.9), I1 (15.33), E2 (40.94), I2 (32.86), E3 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26135 chr2 38300421 38302375 wgEncodeRegDnaseClusteredV2 82 score:1000, srow:613577
26135 chr2 38302381 38304850 wgEncodeRegDnaseClusteredV2 124 score:1000, srow:613578
26135 chr2 38300272 38300927 wgEncodeRegTfbsClusteredV3 E2F1 score:298, expCount:1, expNums:572, expScores:298, srow:2149364
26135 chr2 38300408 38303245 wgEncodeRegTfbsClusteredV3 EZH2 score:572, expCount:5, expNums:6,17,21,36,40, expScores:322,174,422,239,272, srow:2149365
26135 chr2 38300408 38300663 wgEncodeRegTfbsClusteredV3 CEBPB score:276, expCount:2, expNums:277,426, expScores:276,180, srow:2149366
26135 chr2 38300408 38300703 wgEncodeRegTfbsClusteredV3 GATA3 score:302, expCount:1, expNums:272, expScores:302, srow:2149367
26135 chr2 38300463 38300702 wgEncodeRegTfbsClusteredV3 FOXA1 score:341, expCount:1, expNums:271, expScores:341, srow:2149368
26135 chr2 38300688 38301063 wgEncodeRegTfbsClusteredV3 TBP score:195, expCount:1, expNums:359, expScores:195, srow:2149369
26135 chr2 38300800 38301039 wgEncodeRegTfbsClusteredV3 RAD21 score:264, expCount:1, expNums:149, expScores:264, srow:2149370
26135 chr2 38301285 38301540 wgEncodeRegTfbsClusteredV3 MAFK score:342, expCount:2, expNums:437,438, expScores:342,209, srow:2149371
26135 chr2 38301561 38304681 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:24, expNums:61,62,78,104,105,123,124,130,131,168,249,275,306,340,362,402,465,564,596,602,613,632,633,634, expScores:750,351,200,749,455,392,266,506,472,562,150,839,407,295,134,484,365,270,359,139,173,611,887,328, srow:2149372
26135 chr2 38301742 38302051 wgEncodeRegTfbsClusteredV3 SUZ12 score:128, expCount:1, expNums:358, expScores:128, srow:2149373
26135 chr2 38301807 38302137 wgEncodeRegTfbsClusteredV3 E2F1 score:1000, expCount:1, expNums:572, expScores:1000, srow:2149374
26135 chr2 38301814 38302063 wgEncodeRegTfbsClusteredV3 TEAD4 score:172, expCount:1, expNums:160, expScores:172, srow:2149375
26135 chr2 38301844 38302211 wgEncodeRegTfbsClusteredV3 MAX score:223, expCount:2, expNums:278,352, expScores:201,223, srow:2149376
26135 chr2 38301850 38302159 wgEncodeRegTfbsClusteredV3 MYC score:532, expCount:2, expNums:624,626, expScores:532,465, srow:2149377
26135 chr2 38301853 38302110 wgEncodeRegTfbsClusteredV3 CTCF score:271, expCount:3, expNums:595,628,629, expScores:189,271,236, srow:2149378
26135 chr2 38301885 38302124 wgEncodeRegTfbsClusteredV3 USF1 score:156, expCount:1, expNums:161, expScores:156, srow:2149379
26135 chr2 38301906 38302343 wgEncodeRegTfbsClusteredV3 REST score:242, expCount:2, expNums:144,248, expScores:242,200, srow:2149380
26135 chr2 38301997 38302372 wgEncodeRegTfbsClusteredV3 TBP score:174, expCount:1, expNums:359, expScores:174, srow:2149381
26135 chr2 38302305 38302614 wgEncodeRegTfbsClusteredV3 MYC score:212, expCount:1, expNums:624, expScores:212, srow:2149382
26135 chr2 38302382 38302691 wgEncodeRegTfbsClusteredV3 SUZ12 score:107, expCount:1, expNums:358, expScores:107, srow:2149383
26135 chr2 38302837 38303076 wgEncodeRegTfbsClusteredV3 SPI1 score:167, expCount:1, expNums:126, expScores:167, srow:2149384
26135 chr2 38303086 38303667 wgEncodeRegTfbsClusteredV3 REST score:236, expCount:3, expNums:248,257,274, expScores:184,236,145, srow:2149385
26135 chr2 38303099 38303438 wgEncodeRegTfbsClusteredV3 TAF1 score:152, expCount:1, expNums:127, expScores:152, srow:2149386
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  • 25 of 167 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26135 cellmeth_recounts PrEC: 12, LNCaP: 1172, DU145: 129
26135 cellmeth_diffreps_PrECvsLNCaP A=18, B=1112, Length=3220, Event=Up, log2FC=5.95, padj=0
26135 cellmeth_diffreps_PrECvsDU145 A=0, B=12, Length=220, Event=Up, log2FC=Inf, padj=0.00174045876043459
26135 cellmeth_diffreps_PrECvsDU145 A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542
26135 cellmeth_diffreps_PrECvsDU145 A=5, B=36, Length=360, Event=Up, log2FC=2.85, padj=1.95462624160385e-05
26135 cellmeth_diffreps_PrECvsDU145 A=0, B=16, Length=340, Event=Up, log2FC=Inf, padj=0.000142423904773295
26135 cellmeth_diffreps_LNCaPvsDU145 A=1183.43, B=93.54, Length=3100, Event=Down, log2FC=-3.66, padj=0
26135 cellexp id=ENSG00000138061, name=CYP1B1, PrEC=366, str=1564, LNCaP=22, str=6, DU145=3356, str=5217
26135 cellexp id=ENSG00000232973, name=CYP1B1-AS1, PrEC=5, str=7, LNCaP=2, str=4, DU145=67, str=40
26135 tcgameth site:cg00565882, B=0.44, L=0.46, H=0.45
26135 tcgameth site:cg01410359, B=0.37, L=0.45, H=0.45
26135 tcgameth site:cg03890222, B=0.2, L=0.34, H=0.36
26135 tcgameth site:cg06264984, B=0.47, L=0.5, H=0.53
26135 tcgameth site:cg09799983, B=0.27, L=0.54, H=0.55
26135 tcgameth site:cg16439198, B=0.1, L=0.31, H=0.31
26135 tcgameth site:cg18451022, B=0.11, L=0.34, H=0.33
26135 tcgameth site:cg20254225, B=0.28, L=0.36, H=0.38
26135 tcgameth site:cg23151000, B=0.11, L=0.29, H=0.27
26135 tcgaexp gene=CYP1B1, entrez=1545, pos=chr2:38294746-38303323(-), B=6889, L=11287, M=9950, H=8297