DMR 26168 chr2:45159551-45160150 (600bp)
| DMR Stats | |
|---|---|
| Position | chr2:45159551-45160150 (View on UCSC) |
| Width | 600bp |
| Genomic Context | intergenic |
| Nearest Genes | SIX3 (8886bp away) |
| ANODEV p-value | 0.000365729970521 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26168 | chr2 | 45159361 | 45159835 | wgEncodeRegDnaseClusteredV2 | 21 | score:311, srow:617186 |
| 26168 | chr2 | 45159866 | 45160995 | wgEncodeRegDnaseClusteredV2 | 31 | score:393, srow:617187 |
| 26168 | chr2 | 45158291 | 45159565 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:133, expCount:2, expNums:358,578, expScores:110,133, srow:2164495 |
| 26168 | chr2 | 45159570 | 45159809 | wgEncodeRegTfbsClusteredV3 | USF1 | score:334, expCount:1, expNums:161, expScores:334, srow:2164496 |
| 26168 | chr2 | 45159782 | 45159786 | phastConsElements100way | lod=14 | score:255, srow:4513159 |
| 26168 | chr2 | 45159894 | 45160112 | cpgIsland | CpG: 18 | length:219, cpgNum:18, gcNum:141, perCpg:16.4, perGc:64.4, obsExp:0.8, srow:14930 |
| 26168 | chr2 | 45157050 | 45159893 | cpgShore | — | values(x.gr)[overs$srow, ]:26853 |
| 26168 | chr2 | 45160113 | 45161427 | cpgShore | — | values(x.gr)[overs$srow, ]:26854 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26168 | cellmeth_recounts | PrEC: 36, LNCaP: 192, DU145: 13 |  |
| 26168 | cellmeth_diffreps_PrECvsLNCaP | A=35, B=115, Length=440, Event=Up, log2FC=1.72, padj=1.70318273943214e-09 |  |
| 26168 | cellmeth_diffreps_PrECvsDU145 | A=87, B=4, Length=560, Event=Down, log2FC=-4.44, padj=0 |  |
| 26168 | cellmeth_diffreps_PrECvsDU145 | A=31, B=5, Length=320, Event=Down, log2FC=-2.63, padj=0.000268098041907711 |  |
| 26168 | cellmeth_diffreps_LNCaPvsDU145 | A=314.3, B=28.06, Length=1580, Event=Down, log2FC=-3.49, padj=0 |  |
| 26168 | cellexp | id=ENSG00000259439, name=RP11-89K21.1, PrEC=0, str=0, LNCaP=1, str=0, DU145=219, str=128 |  |
| 26168 | tcgameth | site:cg06391932, B=0.45, L=0.64, H=0.62 |  |
| 26168 | tcgameth | site:cg07616374, B=0.49, L=0.66, H=0.64 |  |
| 26168 | tcgameth | site:cg23325963, B=0.33, L=0.7, H=0.65 |  |