DMR Stats | |
---|---|
Position | chr2:54756551-54756700 (View on UCSC) |
Width | 150bp |
Genomic Context | promoter |
Nearest Genes | SPTBN1, RPL23AP32 (0bp away) |
ANODEV p-value | 0.0453416439829 |
Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26207 | SPTBN1 | 16342 | uc002rxu.3 | chr2 | 54683454 | 54898583 | + | 150 | 100.0 | 0.88 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0) | 0.0 |
26207 | SPTBN1 | 16342 | uc002rxv.1 | chr2 | 54684398 | 54856940 | + | 150 | 100.0 | 0.44 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
26207 | RPL23AP32 | 16343 | uc010yot.1 | chr2 | 54756359 | 54756978 | + | 150 | 100.0 | 0.51 | 0 | 100.0 | E1 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26207 | chr2 | 54756663 | 54756952 | wgEncodeRegTfbsClusteredV3 | FOXA2 | score:222, expCount:1, expNums:179, expScores:222, srow:2178852 |
26207 | chr2 | 54756686 | 54756965 | wgEncodeRegTfbsClusteredV3 | FOXA1 | score:392, expCount:2, expNums:177,178, expScores:392,371, srow:2178853 |
26207 | chr2 | 54756686 | 54756985 | wgEncodeRegTfbsClusteredV3 | RXRA | score:126, expCount:1, expNums:194, expScores:126, srow:2178854 |
26207 | chr2 | 54756460 | 54756736 | phastConsElements100way | lod=1682 | score:729, srow:4546114 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26207 | cellmeth_recounts | PrEC: 4, LNCaP: 0, DU145: 0 | |
26207 | cellexp | id=ENSG00000115306, name=SPTBN1, PrEC=35979, str=53090, LNCaP=332, str=129, DU145=33213, str=30506 | |
26207 | cellexp | id=ENSG00000228108, name=AC092839.3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 | |
26207 | cellexp | id=ENSG00000237887, name=RPL23AP32, PrEC=0, str=0, LNCaP=0, str=1, DU145=0, str=0 | |
26207 | tcgaexp | gene=SPTBN1, entrez=6711, pos=chr2:54683454-54898583(+), B=27020, L=18209, M=19030, H=20567 | |
26207 | tcgaexp | gene=RPL23AP32, entrez=56969, pos=chr2:54756359-54756978(+), B=4, L=2, M=3, H=2 |