DMR 26227 chr2:63285801-63287400 (1600bp)

DMR Stats
Positionchr2:63285801-63287400 (View on UCSC)
Width1600bp
Genomic Context3' end
Nearest GenesOTX1 (834bp away)
ANODEV p-value7.96121680583e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26227 chr2 63284841 63287870 wgEncodeRegDnaseClusteredV2 94 score:969, srow:624145
26227 chr2 63277762 63287673 wgEncodeRegTfbsClusteredV3 EZH2 score:947, expCount:7, expNums:3,6,19,21,36,38,43, expScores:153,498,102,435,280,195,261, srow:2191737
26227 chr2 63285652 63285907 wgEncodeRegTfbsClusteredV3 REST score:460, expCount:2, expNums:144,258, expScores:460,161, srow:2191777
26227 chr2 63286171 63286980 wgEncodeRegTfbsClusteredV3 SUZ12 score:125, expCount:2, expNums:358,578, expScores:96,125, srow:2191778
26227 chr2 63286663 63286992 wgEncodeRegTfbsClusteredV3 MAX score:310, expCount:1, expNums:352, expScores:310, srow:2191779
26227 chr2 63286717 63286956 wgEncodeRegTfbsClusteredV3 USF1 score:257, expCount:1, expNums:161, expScores:257, srow:2191780
26227 chr2 63286843 63286978 wgEncodeRegTfbsClusteredV3 ELF1 score:269, expCount:1, expNums:88, expScores:269, srow:2191781
26227 chr2 63287149 63287704 wgEncodeRegTfbsClusteredV3 POLR2A score:278, expCount:2, expNums:22,259, expScores:140,278, srow:2191782
26227 chr2 63287149 63287458 wgEncodeRegTfbsClusteredV3 E2F4 score:219, expCount:1, expNums:562, expScores:219, srow:2191783
26227 chr2 63287150 63287405 wgEncodeRegTfbsClusteredV3 CEBPB score:422, expCount:1, expNums:277, expScores:422, srow:2191784
26227 chr2 63285874 63285903 tfbsConsSites V$PAX4_04 score:748, zScore:2.09, srow:2654870
26227 chr2 63285852 63285883 phastConsElements100way lod=93 score:442, srow:4584906
26227 chr2 63286653 63286655 phastConsElements100way lod=14 score:255, srow:4584907
26227 chr2 63286809 63286817 phastConsElements100way lod=15 score:262, srow:4584908
26227 chr2 63286829 63286834 phastConsElements100way lod=21 score:295, srow:4584909
26227 chr2 63286842 63286850 phastConsElements100way lod=38 score:354, srow:4584910
26227 chr2 63286951 63286953 phastConsElements100way lod=18 score:280, srow:4584911
26227 chr2 63286982 63286984 phastConsElements100way lod=14 score:255, srow:4584912
26227 chr2 63287147 63287156 phastConsElements100way lod=38 score:354, srow:4584913
26227 chr2 63287341 63287347 phastConsElements100way lod=14 score:255, srow:4584914
26227 chr2 63285950 63287097 cpgIsland CpG: 95 length:1148, cpgNum:95, gcNum:740, perCpg:16.6, perGc:64.5, obsExp:0.8, srow:15023
26227 chr2 63284148 63285949 cpgShore — values(x.gr)[overs$srow, ]:27019
26227 chr2 63287098 63289097 cpgShore — values(x.gr)[overs$srow, ]:27020
  • 23 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26227 cellmeth_recounts PrEC: 45, LNCaP: 277, DU145: 51
26227 cellmeth_diffreps_PrECvsLNCaP A=18, B=167, Length=1120, Event=Up, log2FC=3.21, padj=0
26227 cellmeth_diffreps_PrECvsDU145 A=54, B=14, Length=380, Event=Down, log2FC=-1.95, padj=3.66407351213513e-05
26227 cellmeth_diffreps_LNCaPvsDU145 A=222.36, B=31.8, Length=1340, Event=Down, log2FC=-2.81, padj=0
26227 cellmeth_diffreps_LNCaPvsDU145 A=12.83, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00293113488474198
26227 tcgameth site:cg07617338, B=0.41, L=0.6, H=0.59
26227 tcgameth site:cg10927449, B=0.28, L=0.57, H=0.56
26227 tcgameth site:cg11536474, B=0.34, L=0.73, H=0.7
26227 tcgameth site:cg15367453, B=0.18, L=0.34, H=0.35
26227 tcgameth site:cg25168494, B=0.34, L=0.61, H=0.59
26227 tcgameth site:cg25741215, B=0.1, L=0.35, H=0.38
26227 tcgameth site:cg27315333, B=0.37, L=0.63, H=0.62