DMR 26246 chr2:66667501-66668000 (500bp)
| DMR Stats | |
|---|---|
| Position | chr2:66667501-66668000 (View on UCSC) |
| Width | 500bp |
| Genomic Context | promoter |
| Nearest Genes | MEIS1 (0bp away) |
| ANODEV p-value | 0.000741813071015 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26246 | MEIS1 | 16433 | uc002sdt.3 | chr2 | 66662532 | 66799583 | + | 500 | 100.0 | 0.6 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (38.6), E4 (10.2), I4 (51.4), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 26246 | MEIS1 | 16433 | uc002sdu.3 | chr2 | 66662532 | 66799891 | + | 500 | 100.0 | 0.6 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (38.6), E4 (10.2), I4 (51.4), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 26246 | MEIS1 | 16433 | uc002sdw.1 | chr2 | 66667263 | 66796277 | + | 500 | 100.0 | 1.19 | 0 | 52.4 | E1 (0), I1 (38.6), E2 (10.2), I2 (51.4), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 26246 | MEIS1 | 16433 | uc010yqh.2 | chr2 | 66664869 | 66799891 | + | 500 | 100.0 | 4.15 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (38.6), E3 (10.2), I3 (51.4), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 26246 | MEIS1 | 16433 | uc010yqi.2 | chr2 | 66666453 | 66799891 | + | 500 | 100.0 | 3.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (38.6), E3 (10.2), I3 (51.4), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26246 | chr2 | 66667081 | 66667755 | wgEncodeRegDnaseClusteredV2 | 59 | score:542, srow:625902 |
| 26246 | chr2 | 66667841 | 66668235 | wgEncodeRegDnaseClusteredV2 | 51 | score:401, srow:625903 |
| 26246 | chr2 | 66666991 | 66667754 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:329, expCount:1, expNums:6, expScores:329, srow:2200264 |
| 26246 | chr2 | 66668000 | 66668013 | tfbsConsSites | V$CHX10_01 | score:833, zScore:2.22, srow:2662583 |
| 26246 | chr2 | 66667693 | 66667693 | cosmic | COSM1532359 | srow:651812 |
| 26246 | chr2 | 66667699 | 66667699 | cosmic | COSM1532358 | srow:651813 |
| 26246 | chr2 | 66667733 | 66667733 | cosmic | COSM401963 | srow:651814 |
| 26246 | chr2 | 66667495 | 66667520 | phastConsElements100way | lod=44 | score:368, srow:4600829 |
| 26246 | chr2 | 66667523 | 66667535 | phastConsElements100way | lod=38 | score:354, srow:4600830 |
| 26246 | chr2 | 66667540 | 66667548 | phastConsElements100way | lod=20 | score:290, srow:4600831 |
| 26246 | chr2 | 66667572 | 66667576 | phastConsElements100way | lod=23 | score:304, srow:4600832 |
| 26246 | chr2 | 66667593 | 66667618 | phastConsElements100way | lod=66 | score:408, srow:4600833 |
| 26246 | chr2 | 66667626 | 66667634 | phastConsElements100way | lod=51 | score:383, srow:4600834 |
| 26246 | chr2 | 66667639 | 66667643 | phastConsElements100way | lod=14 | score:255, srow:4600835 |
| 26246 | chr2 | 66667676 | 66667755 | phastConsElements100way | lod=913 | score:668, srow:4600836 |
| 26246 | chr2 | 66667811 | 66667823 | phastConsElements100way | lod=33 | score:340, srow:4600837 |
| 26246 | chr2 | 66667876 | 66667879 | phastConsElements100way | lod=16 | score:268, srow:4600838 |
| 26246 | chr2 | 66667888 | 66667894 | phastConsElements100way | lod=21 | score:295, srow:4600839 |
| 26246 | chr2 | 66667903 | 66667905 | phastConsElements100way | lod=15 | score:262, srow:4600840 |
| 26246 | chr2 | 66667915 | 66667945 | phastConsElements100way | lod=108 | score:457, srow:4600841 |
| 26246 | chr2 | 66667952 | 66667963 | phastConsElements100way | lod=26 | score:316, srow:4600842 |
| 26246 | chr2 | 66667965 | 66667990 | phastConsElements100way | lod=147 | score:487, srow:4600843 |
| 26246 | chr2 | 66667992 | 66667997 | phastConsElements100way | lod=30 | score:330, srow:4600844 |
- 23 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26246 | cellmeth_recounts | PrEC: 13, LNCaP: 10, DU145: 31 |  |
| 26246 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=17.77, Length=360, Event=Up, log2FC=Inf, padj=0.000139393111954555 |  |
| 26246 | cellexp | id=ENSG00000143995, name=MEIS1, PrEC=530, str=494, LNCaP=118, str=129, DU145=121, str=78 |  |
| 26246 | cellexp | id=ENSG00000244522, name=AC092669.1, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 26246 | tcgameth | site:cg04288999, B=0.34, L=0.43, H=0.45 |  |
| 26246 | tcgameth | site:cg05877497, B=0.38, L=0.55, H=0.6 |  |
| 26246 | tcgameth | site:cg11433622, B=0.24, L=0.44, H=0.42 |  |
| 26246 | tcgameth | site:cg17107572, B=0.28, L=0.44, H=0.43 |  |
| 26246 | tcgaexp | gene=MEIS1, entrez=4211, pos=chr2:66662532-66799891(+), B=1986, L=1097, M=856, H=809 |  |