DMR 26306 chr2:85106751-85107800 (1050bp)

DMR Stats
Positionchr2:85106751-85107800 (View on UCSC)
Width1050bp
Genomic Contextintron
Nearest GenesTRABD2A (0bp away)
ANODEV p-value4.75941825633e-10
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26306 TRABD2A 16584 uc002sou.5 chr2 85048791 85108369 - 1050 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
26306 TRABD2A 16584 uc010fgc.3 chr2 85063043 85108369 - 1050 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
26306 TRABD2A 16584 uc010ysl.3 chr2 85048791 85108369 - 1050 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26306 chr2 85106661 85107095 wgEncodeRegDnaseClusteredV2 34 score:450, srow:632604
26306 chr2 85107226 85108775 wgEncodeRegDnaseClusteredV2 87 score:777, srow:632605
26306 chr2 85106613 85106960 wgEncodeRegTfbsClusteredV3 PAX5 score:214, expCount:2, expNums:100,101, expScores:214,212, srow:2225382
26306 chr2 85106636 85106965 wgEncodeRegTfbsClusteredV3 IRF4 score:157, expCount:1, expNums:92, expScores:157, srow:2225383
26306 chr2 85106643 85106862 wgEncodeRegTfbsClusteredV3 SPI1 score:1000, expCount:2, expNums:107,126, expScores:1000,1000, srow:2225384
26306 chr2 85106651 85106930 wgEncodeRegTfbsClusteredV3 BCL11A score:169, expCount:1, expNums:82, expScores:169, srow:2225385
26306 chr2 85106700 85106959 wgEncodeRegTfbsClusteredV3 TCF12 score:206, expCount:1, expNums:116, expScores:206, srow:2225386
26306 chr2 85106738 85106878 wgEncodeRegTfbsClusteredV3 RUNX3 score:389, expCount:1, expNums:109, expScores:389, srow:2225387
26306 chr2 85107106 85108516 wgEncodeRegTfbsClusteredV3 EZH2 score:852, expCount:10, expNums:1,6,13,17,19,21,36,38,40,43, expScores:291,321,528,160,115,852,220,479,513,265, srow:2225388
26306 chr2 85107363 85107981 wgEncodeRegTfbsClusteredV3 CHD1 score:241, expCount:2, expNums:4,344, expScores:241,182, srow:2225389
26306 chr2 85107456 85108178 wgEncodeRegTfbsClusteredV3 TFAP2C score:144, expCount:1, expNums:370, expScores:142, srow:2225390
26306 chr2 85107582 85108322 wgEncodeRegTfbsClusteredV3 TFAP2A score:198, expCount:1, expNums:369, expScores:151, srow:2225391
26306 chr2 85107618 85108287 wgEncodeRegTfbsClusteredV3 RBBP5 score:177, expCount:1, expNums:8, expScores:177, srow:2225392
26306 chr2 85107732 85108430 cpgIsland CpG: 71 length:699, cpgNum:71, gcNum:482, perCpg:20.3, perGc:69, obsExp:0.86, srow:15169
26306 chr2 85105732 85107731 cpgShore — values(x.gr)[overs$srow, ]:27291
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26306 cellmeth_recounts PrEC: 5, LNCaP: 43, DU145: 24
26306 cellmeth_diffreps_PrECvsLNCaP A=0, B=15, Length=300, Event=Up, log2FC=Inf, padj=0.000225236251108575
26306 cellexp id=ENSG00000186854, name=TRABD2A, PrEC=287, str=220, LNCaP=22, str=12, DU145=2198, str=1704
26306 tcgameth site:cg01505870, B=0.29, L=0.55, H=0.53
26306 tcgameth site:cg03604892, B=0.23, L=0.55, H=0.5
26306 tcgameth site:cg07475885, B=0.17, L=0.59, H=0.55
26306 tcgameth site:cg08251815, B=0.33, L=0.62, H=0.6
26306 tcgameth site:cg14254080, B=0.31, L=0.59, H=0.58
26306 tcgameth site:cg16063519, B=0.01, L=0.13, H=0.11
26306 tcgameth site:cg18283779, B=0.18, L=0.37, H=0.33
26306 tcgameth site:cg20653012, B=0.25, L=0.59, H=0.55
26306 tcgaexp gene=TRABD2A, entrez=129293, pos=chr2:85048791-85108369(-), B=30, L=22, M=51, H=33