DMR 26655 chr2:213400951-213401600 (650bp)
| DMR Stats | |
|---|---|
| Position | chr2:213400951-213401600 (View on UCSC) |
| Width | 650bp |
| Genomic Context | intron |
| Nearest Genes | ERBB4 (0bp away) |
| ANODEV p-value | 1.38896347895e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26655 | ERBB4 | 17544 | uc002veg.1 | chr2 | 212240442 | 213403352 | - | 650 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0) | 0.0 |
| 26655 | ERBB4 | 17544 | uc002veh.1 | chr2 | 212240442 | 213403352 | - | 650 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0) | 0.0 |
| 26655 | ERBB4 | 17544 | uc010fut.1 | chr2 | 212426487 | 213403352 | - | 650 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0) | 0.0 |
| 26655 | ERBB4 | 17544 | uc010zji.1 | chr2 | 212240442 | 213403352 | - | 650 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0) | 0.0 |
| 26655 | ERBB4 | 17544 | uc010zjj.1 | chr2 | 212240442 | 213403352 | - | 650 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26655 | chr2 | 213401141 | 213401735 | wgEncodeRegDnaseClusteredV2 | 19 | score:217, srow:680071 |
| 26655 | chr2 | 213400901 | 213401435 | wgEncodeRegTfbsClusteredV3 | TCF7L2 | score:319, expCount:2, expNums:367,573, expScores:267,319, srow:2382654 |
| 26655 | chr2 | 213401324 | 213403595 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:536, expCount:9, expNums:6,13,15,17,19,36,38,40,43, expScores:325,371,536,234,140,261,210,278,334, srow:2382655 |
| 26655 | chr2 | 213401337 | 213401652 | wgEncodeRegTfbsClusteredV3 | CTCF | score:254, expCount:2, expNums:628,645, expScores:254,198, srow:2382656 |
| 26655 | chr2 | 213401585 | 213401834 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:331, expCount:1, expNums:160, expScores:331, srow:2382657 |
| 26655 | chr2 | 213400969 | 213400979 | tfbsConsSites | V$FOXO4_01 | score:929, zScore:2.01, srow:2959785 |
| 26655 | chr2 | 213400969 | 213400982 | tfbsConsSites | V$FOXO3_01 | score:822, zScore:1.65, srow:2959786 |
| 26655 | chr2 | 213400970 | 213400991 | tfbsConsSites | V$MEF2_03 | score:816, zScore:2.36, srow:2959787 |
| 26655 | chr2 | 213400989 | 213401000 | tfbsConsSites | V$CDC5_01 | score:854, zScore:2.37, srow:2959788 |
| 26655 | chr2 | 213401103 | 213401116 | tfbsConsSites | V$CEBP_Q2 | score:880, zScore:1.67, srow:2959789 |
| 26655 | chr2 | 213401151 | 213401170 | tfbsConsSites | V$PPARA_01 | score:737, zScore:1.7, srow:2959790 |
| 26655 | chr2 | 213401171 | 213401184 | tfbsConsSites | V$FAC1_01 | score:865, zScore:2.31, srow:2959791 |
| 26655 | chr2 | 213401217 | 213401225 | tfbsConsSites | V$MSX1_01 | score:909, zScore:1.96, srow:2959792 |
| 26655 | chr2 | 213401237 | 213401250 | tfbsConsSites | V$SOX9_B1 | score:893, zScore:2.32, srow:2959793 |
| 26655 | chr2 | 213401239 | 213401248 | tfbsConsSites | V$SOX5_01 | score:945, zScore:2.05, srow:2959794 |
| 26655 | chr2 | 213401246 | 213401261 | tfbsConsSites | V$AHRARNT_01 | score:910, zScore:3.2, srow:2959795 |
| 26655 | chr2 | 213401247 | 213401260 | tfbsConsSites | V$OCT1_05 | score:849, zScore:1.96, srow:2959796 |
| 26655 | chr2 | 213401344 | 213401371 | tfbsConsSites | V$PAX5_02 | score:770, zScore:1.8, srow:2959797 |
| 26655 | chr2 | 213401355 | 213401384 | tfbsConsSites | V$PAX4_04 | score:743, zScore:2, srow:2959798 |
| 26655 | chr2 | 213401374 | 213401391 | tfbsConsSites | V$CART1_01 | score:862, zScore:3.18, srow:2959799 |
| 26655 | chr2 | 213401574 | 213401586 | tfbsConsSites | V$NKX61_01 | score:836, zScore:1.83, srow:2959800 |
| 26655 | chr2 | 213401578 | 213401598 | tfbsConsSites | V$PPARG_01 | score:740, zScore:1.92, srow:2959801 |
| 26655 | chr2 | 213401579 | 213401597 | tfbsConsSites | V$HNF4_01 | score:808, zScore:1.68, srow:2959802 |
| 26655 | chr2 | 213401587 | 213401598 | tfbsConsSites | V$OCT1_07 | score:853, zScore:1.66, srow:2959803 |
| 26655 | chr2 | 213400962 | 213400965 | phastConsElements100way | lod=13 | score:247, srow:5122138 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26655 | cellmeth_recounts | PrEC: 6, LNCaP: 60, DU145: 3 |  |
| 26655 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=44, Length=560, Event=Up, log2FC=3.46, padj=3.18073309507325e-08 |  |
| 26655 | cellmeth_diffreps_LNCaPvsDU145 | A=57.73, B=0.94, Length=700, Event=Down, log2FC=-5.95, padj=0 |  |
| 26655 | cellexp | id=ENSG00000178568, name=ERBB4, PrEC=4, str=21, LNCaP=7, str=8, DU145=1, str=2 |  |
| 26655 | tcgameth | site:cg00326719, B=0.25, L=0.49, H=0.48 |  |
| 26655 | tcgameth | site:cg07536926, B=0.19, L=0.42, H=0.43 |  |
| 26655 | tcgameth | site:cg11058366, B=0.28, L=0.58, H=0.55 |  |
| 26655 | tcgameth | site:cg12281565, B=0.26, L=0.49, H=0.5 |  |
| 26655 | tcgameth | site:cg20215622, B=0.13, L=0.33, H=0.28 |  |
| 26655 | tcgaexp | gene=ERBB4, entrez=2066, pos=chr2:212240442-213403352(-), B=376, L=84, M=121, H=117 |  |