DMR 26673 chr2:219723651-219724050 (400bp)

DMR Stats
Positionchr2:219723651-219724050 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesWNT6 (495bp away)
ANODEV p-value2.74260838383e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26673 chr2 219723761 219724215 wgEncodeRegDnaseClusteredV2 14 score:1000, srow:683350
26673 chr2 219723216 219723811 wgEncodeRegTfbsClusteredV3 TCF7L2 score:182, expCount:1, expNums:581, expScores:182, srow:2393790
26673 chr2 219723281 219726370 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:10, expNums:6,13,15,17,19,21,36,38,40,43, expScores:406,563,567,221,165,373,345,190,253,326, srow:2393791
26673 chr2 219723801 219724110 wgEncodeRegTfbsClusteredV3 SUZ12 score:89, expCount:1, expNums:358, expScores:89, srow:2393792
26673 chr2 219723661 219723674 tfbsConsSites V$SRF_Q6 score:819, zScore:1.82, srow:2976616
26673 chr2 219723694 219723713 tfbsConsSites V$ARNT_02 score:793, zScore:1.99, srow:2976617
26673 chr2 219723694 219723713 tfbsConsSites V$MYCMAX_03 score:780, zScore:1.69, srow:2976618
26673 chr2 219723695 219723713 tfbsConsSites V$PAX2_01 score:768, zScore:1.65, srow:2976619
26673 chr2 219723899 219723907 tfbsConsSites V$AP2GAMMA_01 score:971, zScore:1.66, srow:2976620
26673 chr2 219724038 219724046 tfbsConsSites V$AP2GAMMA_01 score:972, zScore:1.67, srow:2976621
26673 chr2 219723661 219723675 phastConsElements100way lod=38 score:354, srow:5149901
26673 chr2 219723684 219723686 phastConsElements100way lod=12 score:240, srow:5149902
26673 chr2 219723877 219723885 phastConsElements100way lod=32 score:337, srow:5149903
26673 chr2 219724028 219724034 phastConsElements100way lod=21 score:295, srow:5149904
26673 chr2 219723703 219725010 cpgIsland CpG: 111 length:1308, cpgNum:111, gcNum:748, perCpg:17, perGc:57.2, obsExp:1.06, srow:15954
26673 chr2 219721703 219723702 cpgShore — values(x.gr)[overs$srow, ]:28741
  • 16 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26673 cellmeth_recounts PrEC: 1, LNCaP: 69, DU145: 10
26673 cellmeth_diffreps_PrECvsLNCaP A=2, B=55, Length=520, Event=Up, log2FC=4.78, padj=4.47247444752541e-13
26673 cellmeth_diffreps_LNCaPvsDU145 A=56.66, B=6.55, Length=420, Event=Down, log2FC=-3.11, padj=5.63538269357276e-09
26673 tcgameth site:cg05985303, B=0.33, L=0.6, H=0.57