DMR 26696 chr2:223158751-223159000 (250bp)
| DMR Stats | |
|---|---|
| Position | chr2:223158751-223159000 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | PAX3 (0bp away) |
| ANODEV p-value | 0.00111685834656 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26696 | PAX3 | 17651 | uc002vmt.2 | chr2 | 223064606 | 223163715 | - | 250 | 100.0 | 1.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 26696 | PAX3 | 17651 | uc002vmv.2 | chr2 | 223064606 | 223163715 | - | 250 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 26696 | PAX3 | 17651 | uc002vmw.2 | chr2 | 223064606 | 223163715 | - | 250 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 26696 | PAX3 | 17651 | uc002vmx.2 | chr2 | 223064606 | 223163715 | - | 250 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 26696 | PAX3 | 17651 | uc002vmy.2 | chr2 | 223064606 | 223163715 | - | 250 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 26696 | PAX3 | 17651 | uc002vmz.2 | chr2 | 223158349 | 223163715 | - | 250 | 100.0 | 0.52 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0) | 100.0 |
| 26696 | PAX3 | 17651 | uc002vna.2 | chr2 | 223158349 | 223163715 | - | 250 | 100.0 | 0.73 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) | 100.0 |
| 26696 | PAX3 | 17651 | uc010fwo.3 | chr2 | 223066432 | 223163715 | - | 250 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (46), I4 (54), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 8 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26696 | chr2 | 223158481 | 223158755 | wgEncodeRegDnaseClusteredV2 | 4 | score:288, srow:684996 |
| 26696 | chr2 | 223158801 | 223159215 | wgEncodeRegDnaseClusteredV2 | 23 | score:308, srow:684997 |
| 26696 | chr2 | 223158022 | 223172553 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:9, expNums:3,6,13,15,21,36,38,40,43, expScores:173,820,370,495,336,323,194,206,300, srow:2399092 |
| 26696 | chr2 | 223158742 | 223159198 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:240, expCount:2, expNums:358,578, expScores:240,195, srow:2399093 |
| 26696 | chr2 | 223158824 | 223159423 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:231, expCount:1, expNums:348, expScores:231, srow:2399094 |
| 26696 | chr2 | 223158902 | 223158911 | tfbsConsSites | V$CDPCR1_01 | score:919, zScore:3.28, srow:2994323 |
| 26696 | chr2 | 223158907 | 223158907 | cosmic | COSM1405781 | srow:726499 |
| 26696 | chr2 | 223158907 | 223158907 | cosmic | COSM1405782 | srow:726500 |
| 26696 | chr2 | 223158907 | 223158907 | cosmic | COSM1405780 | srow:726501 |
| 26696 | chr2 | 223158881 | 223158904 | phastConsElements100way | lod=233 | score:533, srow:5171642 |
| 26696 | chr2 | 223158906 | 223158919 | phastConsElements100way | lod=191 | score:513, srow:5171643 |
| 26696 | chr2 | 223158921 | 223158928 | phastConsElements100way | lod=61 | score:400, srow:5171644 |
| 26696 | chr2 | 223158930 | 223158940 | phastConsElements100way | lod=83 | score:431, srow:5171645 |
| 26696 | chr2 | 223158942 | 223158952 | phastConsElements100way | lod=68 | score:411, srow:5171646 |
| 26696 | chr2 | 223158954 | 223158961 | phastConsElements100way | lod=53 | score:387, srow:5171647 |
| 26696 | chr2 | 223158963 | 223158970 | phastConsElements100way | lod=76 | score:422, srow:5171648 |
| 26696 | chr2 | 223158972 | 223158976 | phastConsElements100way | lod=55 | score:390, srow:5171649 |
| 26696 | chr2 | 223158978 | 223159023 | phastConsElements100way | lod=448 | score:598, srow:5171650 |
| 26696 | chr2 | 223156155 | 223159725 | cpgShore | — | values(x.gr)[overs$srow, ]:28838 |
- 19 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26696 | cellmeth_recounts | PrEC: 19, LNCaP: 14, DU145: 1 |  |
| 26696 | cellmeth_diffreps_PrECvsLNCaP | A=28, B=6, Length=260, Event=Down, log2FC=-2.22, padj=0.00282244274345605 |  |
| 26696 | cellmeth_diffreps_PrECvsDU145 | A=28, B=0, Length=400, Event=Down, log2FC=-Inf, padj=4.7070673891257e-08 |  |
| 26696 | cellexp | id=ENSG00000135903, name=PAX3, PrEC=4, str=43, LNCaP=0, str=0, DU145=0, str=0 |  |
| 26696 | tcgaexp | gene=PAX3, entrez=5077, pos=chr2:223064606-223163715(-), B=4, L=2, M=2, H=2 |  |