DMR 26780 chr2:239139851-239140600 (750bp)

DMR Stats
Positionchr2:239139851-239140600 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesLOC151174, LOC643387 (0bp away)
ANODEV p-value2.54166803034e-05
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26780 LOC151174 17796 uc002vxx.3 chr2 239133754 239140318 - 468 62.4 0.03 0 100.0 E1 (45.87), I1 (16.53), E2 (0), I2 (0), E3 (0) 0.0
26780 LOC151174 17796 uc002vxy.2 chr2 239133754 239140318 - 468 62.4 0.24 1 100.0 E1 (45.87), I1 (16.53), E2 (0), I2 (0), E3 (0) 0.0
26780 LOC643387 17797 uc010znu.2 chr2 239140327 239142985 + 274 36.53 0.1 0 100.0 E1 (36.53) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26780 chr2 239139866 239140115 wgEncodeRegDnaseClusteredV2 16 score:387, srow:694861
26780 chr2 239140181 239140435 wgEncodeRegDnaseClusteredV2 94 score:1000, srow:694862
26780 chr2 239139669 239140577 wgEncodeRegTfbsClusteredV3 EZH2 score:425, expCount:2, expNums:40,43, expScores:227,425, srow:2428506
26780 chr2 239139841 239140564 wgEncodeRegTfbsClusteredV3 RBBP5 score:363, expCount:1, expNums:33, expScores:363, srow:2428507
26780 chr2 239139902 239140651 wgEncodeRegTfbsClusteredV3 POLR2A score:701, expCount:10, expNums:229,330,340,520,522,523,525,577,583,622, expScores:423,268,190,262,334,396,172,701,678,231, srow:2428508
26780 chr2 239139919 239140428 wgEncodeRegTfbsClusteredV3 SAP30 score:148, expCount:1, expNums:34, expScores:148, srow:2428509
26780 chr2 239139963 239140486 wgEncodeRegTfbsClusteredV3 HDAC1 score:228, expCount:1, expNums:26, expScores:228, srow:2428510
26780 chr2 239139979 239140554 wgEncodeRegTfbsClusteredV3 KDM5B score:179, expCount:1, expNums:31, expScores:179, srow:2428511
26780 chr2 239139984 239140503 wgEncodeRegTfbsClusteredV3 SIN3A score:336, expCount:1, expNums:357, expScores:336, srow:2428512
26780 chr2 239140016 239140505 wgEncodeRegTfbsClusteredV3 TAF1 score:276, expCount:1, expNums:157, expScores:276, srow:2428513
26780 chr2 239140024 239140633 wgEncodeRegTfbsClusteredV3 SP4 score:402, expCount:1, expNums:155, expScores:402, srow:2428514
26780 chr2 239140032 239140360 wgEncodeRegTfbsClusteredV3 PHF8 score:692, expCount:1, expNums:30, expScores:692, srow:2428515
26780 chr2 239140063 239140514 wgEncodeRegTfbsClusteredV3 MYC score:859, expCount:6, expNums:486,487,488,489,575,620, expScores:127,443,347,352,859,103, srow:2428516
26780 chr2 239140065 239140504 wgEncodeRegTfbsClusteredV3 CBX3 score:342, expCount:1, expNums:211, expScores:342, srow:2428517
26780 chr2 239140071 239140510 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:161, expCount:2, expNums:232,250, expScores:161,136, srow:2428518
26780 chr2 239140094 239140469 wgEncodeRegTfbsClusteredV3 TBP score:216, expCount:1, expNums:545, expScores:216, srow:2428519
26780 chr2 239140105 239140474 wgEncodeRegTfbsClusteredV3 MAZ score:203, expCount:1, expNums:512, expScores:203, srow:2428520
26780 chr2 239140118 239140397 wgEncodeRegTfbsClusteredV3 CTCF score:141, expCount:1, expNums:662, expScores:141, srow:2428521
26780 chr2 239140118 239140474 wgEncodeRegTfbsClusteredV3 MXI1 score:234, expCount:2, expNums:353,513, expScores:234,147, srow:2428522
26780 chr2 239140124 239140453 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:5, expNums:223,352,460,511,576, expScores:1000,247,279,652,1000, srow:2428523
26780 chr2 239140140 239140436 wgEncodeRegTfbsClusteredV3 E2F6 score:650, expCount:2, expNums:215,495, expScores:605,650, srow:2428524
26780 chr2 239140141 239140616 wgEncodeRegTfbsClusteredV3 SIX5 score:657, expCount:4, expNums:64,111,152,233, expScores:310,408,541,657, srow:2428525
26780 chr2 239140171 239140530 wgEncodeRegTfbsClusteredV3 IRF1 score:460, expCount:1, expNums:506, expScores:460, srow:2428526
26780 chr2 239140183 239140435 wgEncodeRegTfbsClusteredV3 TCF7L2 score:597, expCount:1, expNums:581, expScores:597, srow:2428527
26780 chr2 239140193 239140530 wgEncodeRegTfbsClusteredV3 SP1 score:243, expCount:3, expNums:112,153,234, expScores:135,238,243, srow:2428528
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  • 25 of 31 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26780 cellmeth_recounts PrEC: 60, LNCaP: 925, DU145: 20
26780 cellmeth_diffreps_PrECvsLNCaP A=97, B=749, Length=1080, Event=Up, log2FC=2.95, padj=0
26780 cellmeth_diffreps_PrECvsDU145 A=42, B=5, Length=460, Event=Down, log2FC=-3.07, padj=7.02931750785797e-07
26780 cellmeth_diffreps_PrECvsDU145 A=48, B=3, Length=420, Event=Down, log2FC=-4, padj=5.5402471670511e-10
26780 cellmeth_diffreps_LNCaPvsDU145 A=801.78, B=15.9, Length=1200, Event=Down, log2FC=-5.66, padj=0
26780 cellexp id=ENSG00000186235, name=AC016757.3, PrEC=1, str=0, LNCaP=5, str=0, DU145=2, str=0
26780 cellexp id=ENSG00000225057, name=AC096574.4, PrEC=17, str=12, LNCaP=155, str=51, DU145=19, str=2
26780 tcgameth site:cg04166618, B=0.27, L=0.39, H=0.4
26780 tcgameth site:cg06732439, B=0.15, L=0.38, H=0.41
26780 tcgameth site:cg07323141, B=0.23, L=0.44, H=0.42
26780 tcgameth site:cg12608247, B=0.23, L=0.42, H=0.42
26780 tcgameth site:cg13530938, B=0.33, L=0.68, H=0.63
26780 tcgameth site:cg21272465, B=0.07, L=0.37, H=0.38
26780 tcgameth site:cg23497383, B=0.39, L=0.71, H=0.67
26780 tcgameth site:cg24079051, B=0.34, L=0.54, H=0.54
26780 tcgaexp gene=LOC151174, entrez=151174, pos=chr2:239133754-239140318(-), B=16, L=14, M=8, H=8
26780 tcgaexp gene=LOC643387, entrez=643387, pos=chr2:239140327-239142985(+), B=121, L=131, M=121, H=134