DMR 26800 chr2:240196651-240197250 (600bp)

DMR Stats
Positionchr2:240196651-240197250 (View on UCSC)
Width600bp
Genomic Contextintron
Nearest GenesHDAC4 (0bp away)
ANODEV p-value0.000115309445363
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26800 HDAC4 17807 uc002vyk.4 chr2 239969864 240322643 - 600 100.0 1.94 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0) 0.0
26800 HDAC4 17807 uc010fyz.1 chr2 240011372 240220334 - 600 100.0 1.94 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
26800 HDAC4 17807 uc010fza.2 chr2 240016312 240323346 - 600 100.0 1.94 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
26800 HDAC4 17807 uc010zoa.1 chr2 240016312 240220334 - 600 100.0 1.95 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26800 chr2 240196366 240197195 wgEncodeRegDnaseClusteredV2 103 score:1000, srow:695973
26800 chr2 240197241 240197415 wgEncodeRegDnaseClusteredV2 5 score:270, srow:695974
26800 chr2 240196082 240196706 wgEncodeRegTfbsClusteredV3 POLR2A score:924, expCount:15, expNums:61,62,163,228,229,275,520,521,522,523,525,563,564,596,622, expScores:924,829,329,237,899,331,169,191,517,256,258,214,182,544,268, srow:2430513
26800 chr2 240196232 240196687 wgEncodeRegTfbsClusteredV3 GTF2F1 score:199, expCount:1, expNums:389, expScores:199, srow:2430514
26800 chr2 240196267 240196666 wgEncodeRegTfbsClusteredV3 TAF1 score:121, expCount:1, expNums:238, expScores:121, srow:2430515
26800 chr2 240196272 240196707 wgEncodeRegTfbsClusteredV3 UBTF score:152, expCount:1, expNums:549, expScores:152, srow:2430516
26800 chr2 240196308 240196683 wgEncodeRegTfbsClusteredV3 TBP score:284, expCount:1, expNums:545, expScores:284, srow:2430517
26800 chr2 240196324 240196679 wgEncodeRegTfbsClusteredV3 MAX score:192, expCount:1, expNums:511, expScores:192, srow:2430519
26800 chr2 240196354 240196737 wgEncodeRegTfbsClusteredV3 MYC score:139, expCount:1, expNums:487, expScores:139, srow:2430520
26800 chr2 240196359 240196728 wgEncodeRegTfbsClusteredV3 MAZ score:183, expCount:1, expNums:512, expScores:183, srow:2430521
26800 chr2 240196383 240196782 wgEncodeRegTfbsClusteredV3 NR2F2 score:290, expCount:1, expNums:225, expScores:290, srow:2430522
26800 chr2 240196396 240196691 wgEncodeRegTfbsClusteredV3 RCOR1 score:187, expCount:1, expNums:492, expScores:187, srow:2430523
26800 chr2 240196555 240197104 wgEncodeRegTfbsClusteredV3 GATA2 score:1000, expCount:3, expNums:498,586,591, expScores:110,1000,196, srow:2430524
26800 chr2 240196680 240197135 wgEncodeRegTfbsClusteredV3 CCNT2 score:146, expCount:1, expNums:476, expScores:146, srow:2430525
26800 chr2 240196696 240196965 wgEncodeRegTfbsClusteredV3 REST score:225, expCount:1, expNums:257, expScores:225, srow:2430526
26800 chr2 240196707 240197361 wgEncodeRegTfbsClusteredV3 TCF7L2 score:1000, expCount:4, expNums:363,413,414,581, expScores:1000,493,1000,250, srow:2430527
26800 chr2 240196722 240197317 wgEncodeRegTfbsClusteredV3 NFIC score:237, expCount:1, expNums:97, expScores:237, srow:2430528
26800 chr2 240196733 240197208 wgEncodeRegTfbsClusteredV3 STAT1 score:265, expCount:1, expNums:410, expScores:265, srow:2430529
26800 chr2 240196756 240197391 wgEncodeRegTfbsClusteredV3 POLR2A score:505, expCount:8, expNums:62,163,259,402,563,564,577,596, expScores:209,505,259,297,216,240,177,204, srow:2430530
26800 chr2 240196757 240197276 wgEncodeRegTfbsClusteredV3 ATF2 score:262, expCount:1, expNums:79, expScores:262, srow:2430531
26800 chr2 240196793 240197172 wgEncodeRegTfbsClusteredV3 E2F1 score:144, expCount:1, expNums:390, expScores:144, srow:2430532
26800 chr2 240196798 240197351 wgEncodeRegTfbsClusteredV3 MAX score:790, expCount:5, expNums:223,278,395,511,576, expScores:295,258,427,242,790, srow:2430533
26800 chr2 240196814 240197018 wgEncodeRegTfbsClusteredV3 PHF8 score:289, expCount:1, expNums:30, expScores:289, srow:2430534
26800 chr2 240196816 240197131 wgEncodeRegTfbsClusteredV3 EBF1 score:394, expCount:2, expNums:86,292, expScores:394,245, srow:2430535
26800 chr2 240196822 240197470 wgEncodeRegTfbsClusteredV3 CTCF score:587, expCount:34, expNums:2,16,18,24,37,39,44,213,290,463,493,595,597,598,601,604,621,630,635,636,639,640,642,643,645,646,648,650,653,657,662,673,682,687, expScores:97,139,121,215,207,121,214,154,230,150,184,587,177,169,116,258,176,191,122,200,145,143,273,227,530,194,147,115,198,155,232,201,180,189, srow:2430536
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  • 25 of 91 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26800 cellmeth_recounts PrEC: 26, LNCaP: 26, DU145: 0
26800 cellmeth_diffreps_PrECvsDU145 A=122, B=1, Length=1520, Event=Down, log2FC=-6.93, padj=0
26800 cellexp id=ENSG00000068024, name=HDAC4, PrEC=765, str=570, LNCaP=803, str=661, DU145=1779, str=1296
26800 tcgameth site:cg05903736, B=0.45, L=0.65, H=0.65
26800 tcgameth site:cg15058210, B=0.39, L=0.65, H=0.63
26800 tcgameth site:cg15978561, B=0.39, L=0.66, H=0.64
26800 tcgaexp gene=HDAC4, entrez=9759, pos=chr2:239969864-240323346(-), B=1448, L=1412, M=1302, H=1292