DMR 26822 chr2:241975501-241976250 (750bp)
| DMR Stats | |
|---|---|
| Position | chr2:241975501-241976250 (View on UCSC) |
| Width | 750bp |
| Genomic Context | exon |
| Nearest Genes | SNED1 (0bp away) |
| ANODEV p-value | 0.00278539906621 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26822 | SNED1 | 17837 | uc002wah.1 | chr2 | 241938255 | 242033643 | + | 750 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (94.13), E5 (5.87), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26822 | chr2 | 241975306 | 241975515 | wgEncodeRegDnaseClusteredV2 | 6 | score:908, srow:697882 |
| 26822 | chr2 | 241975526 | 241976795 | wgEncodeRegDnaseClusteredV2 | 59 | score:1000, srow:697883 |
| 26822 | chr2 | 241975450 | 241975773 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:181, expCount:1, expNums:215, expScores:181, srow:2433758 |
| 26822 | chr2 | 241975537 | 241976206 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:184, expCount:1, expNums:8, expScores:184, srow:2433759 |
| 26822 | chr2 | 241975689 | 241976318 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:214, expCount:1, expNums:40, expScores:214, srow:2433760 |
| 26822 | chr2 | 241975829 | 241976318 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:142, expCount:1, expNums:157, expScores:142, srow:2433761 |
| 26822 | chr2 | 241975868 | 241976256 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:342, expCount:2, expNums:86,292, expScores:235,342, srow:2433762 |
| 26822 | chr2 | 241975871 | 241976310 | wgEncodeRegTfbsClusteredV3 | UBTF | score:544, expCount:2, expNums:548,549, expScores:194,544, srow:2433763 |
| 26822 | chr2 | 241975903 | 241976302 | wgEncodeRegTfbsClusteredV3 | NR2F2 | score:322, expCount:1, expNums:225, expScores:322, srow:2433764 |
| 26822 | chr2 | 241975911 | 241976174 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:185, expCount:1, expNums:100, expScores:185, srow:2433765 |
| 26822 | chr2 | 241975934 | 241976309 | wgEncodeRegTfbsClusteredV3 | TBP | score:257, expCount:1, expNums:412, expScores:257, srow:2433766 |
| 26822 | chr2 | 241975939 | 241976242 | wgEncodeRegTfbsClusteredV3 | ESR1 | score:523, expCount:2, expNums:74,75, expScores:523,284, srow:2433767 |
| 26822 | chr2 | 241975958 | 241976204 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:1000, expCount:1, expNums:109, expScores:1000, srow:2433768 |
| 26822 | chr2 | 241976230 | 241976449 | wgEncodeRegTfbsClusteredV3 | PBX3 | score:177, expCount:1, expNums:102, expScores:177, srow:2433769 |
| 26822 | chr2 | 241976210 | 241976210 | cosmic | COSM215868 | srow:735759 |
| 26822 | chr2 | 241976222 | 241976222 | cosmic | COSM241702 | srow:735760 |
| 26822 | chr2 | 241976196 | 241976199 | phastConsElements100way | lod=14 | score:255, srow:5222502 |
| 26822 | chr2 | 241976204 | 241976210 | phastConsElements100way | lod=73 | score:418, srow:5222503 |
| 26822 | chr2 | 241976212 | 241976228 | phastConsElements100way | lod=124 | score:471, srow:5222504 |
| 26822 | chr2 | 241976230 | 241976231 | phastConsElements100way | lod=26 | score:316, srow:5222505 |
| 26822 | chr2 | 241976233 | 241976240 | phastConsElements100way | lod=91 | score:440, srow:5222506 |
| 26822 | chr2 | 241976242 | 241976243 | phastConsElements100way | lod=40 | score:359, srow:5222507 |
| 26822 | chr2 | 241976245 | 241976246 | phastConsElements100way | lod=38 | score:354, srow:5222508 |
| 26822 | chr2 | 241975534 | 241976318 | cpgIsland | CpG: 55 | length:785, cpgNum:55, gcNum:515, perCpg:14, perGc:65.6, obsExp:0.65, srow:16226 |
| 26822 | chr2 | 241975144 | 241975533 | cpgShore | — | values(x.gr)[overs$srow, ]:29232 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26822 | cellmeth_recounts | PrEC: 21, LNCaP: 52, DU145: 3 |  |
| 26822 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=14, Length=280, Event=Up, log2FC=Inf, padj=0.000432533284720616 |  |
| 26822 | cellmeth_diffreps_PrECvsLNCaP | A=100, B=27, Length=640, Event=Down, log2FC=-1.89, padj=1.98720550097253e-09 |  |
| 26822 | cellmeth_diffreps_PrECvsDU145 | A=100, B=0, Length=780, Event=Down, log2FC=-Inf, padj=0 |  |
| 26822 | cellmeth_diffreps_LNCaPvsDU145 | A=14.97, B=0, Length=280, Event=Down, log2FC=-Inf, padj=0.000816028517810598 |  |
| 26822 | cellmeth_diffreps_LNCaPvsDU145 | A=25.66, B=0, Length=380, Event=Down, log2FC=-Inf, padj=7.44859299780478e-07 |  |
| 26822 | cellexp | id=ENSG00000162804, name=SNED1, PrEC=30, str=66, LNCaP=673, str=396, DU145=128, str=129 |  |
| 26822 | cellexp | id=ENSG00000225521, name=AC005237.4, PrEC=1, str=2, LNCaP=13, str=13, DU145=1, str=2 |  |
| 26822 | tcgameth | site:cg10717312, B=0.6, L=0.71, H=0.72 |  |
| 26822 | tcgameth | site:cg22635676, B=0.34, L=0.75, H=0.75 |  |
| 26822 | tcgameth | site:cg26707709, B=0.22, L=0.51, H=0.5 |  |
| 26822 | tcgameth | site:cg26718213, B=0.35, L=0.6, H=0.59 |  |
| 26822 | tcgaexp | gene=SNED1, entrez=25992, pos=chr2:241938255-242033643(+), B=1700, L=1441, M=1494, H=1529 |  |