DMR 26825 chr2:242434851-242435250 (400bp)
| DMR Stats | |
|---|---|
| Position | chr2:242434851-242435250 (View on UCSC) |
| Width | 400bp |
| Genomic Context | 3' end |
| Nearest Genes | STK25 (0bp away) |
| ANODEV p-value | 6.63484591828e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26825 | STK25 | 17847 | uc002wbl.3 | chr2 | 242434432 | 242439456 | - | 400 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 26825 | STK25 | 17847 | uc002wbm.4 | chr2 | 242434122 | 242447775 | - | 400 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (33.75), E11 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc002wbn.4 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (33.75), E12 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc002wbo.4 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (33.75), E11 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc002wbp.4 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (33.75), E12 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc010fzo.4 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (33.75), E11 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc010zos.3 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (33.75), E11 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc010zot.3 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (33.75), E12 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc010zou.3 | chr2 | 242434122 | 242448110 | - | 400 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (33.75), E11 (66.5) | 67.75 |
| 26825 | STK25 | 17847 | uc010zov.3 | chr2 | 242434122 | 242448987 | - | 400 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (33.75), E11 (66.5) | 67.75 |
- 10 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26825 | chr2 | 242434646 | 242435010 | wgEncodeRegDnaseClusteredV2 | 6 | score:295, srow:698332 |
| 26825 | chr2 | 242435026 | 242435735 | wgEncodeRegDnaseClusteredV2 | 9 | score:370, srow:698333 |
| 26825 | chr2 | 242434714 | 242435506 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:236, expCount:2, expNums:146,616, expScores:236,232, srow:2435211 |
| 26825 | chr2 | 242435000 | 242435007 | tfbsConsSites | V$ATF6_01 | score:868, zScore:1.67, srow:3028414 |
| 26825 | chr2 | 242435085 | 242435104 | tfbsConsSites | V$MYCMAX_03 | score:778, zScore:1.67, srow:3028415 |
| 26825 | chr2 | 242435087 | 242435102 | tfbsConsSites | V$ARNT_01 | score:836, zScore:1.7, srow:3028416 |
| 26825 | chr2 | 242435088 | 242435101 | tfbsConsSites | V$USF_02 | score:928, zScore:2.07, srow:3028417 |
| 26825 | chr2 | 242435090 | 242435099 | tfbsConsSites | V$MYOD_Q6 | score:959, zScore:1.7, srow:3028418 |
| 26825 | chr2 | 242435090 | 242435100 | tfbsConsSites | V$SREBP1_01 | score:852, zScore:1.72, srow:3028419 |
| 26825 | chr2 | 242435091 | 242435100 | tfbsConsSites | V$NKX22_01 | score:877, zScore:1.73, srow:3028420 |
| 26825 | chr2 | 242435067 | 242435068 | phastConsElements100way | lod=14 | score:255, srow:5224574 |
| 26825 | chr2 | 242435076 | 242435084 | phastConsElements100way | lod=72 | score:417, srow:5224575 |
| 26825 | chr2 | 242435087 | 242435088 | phastConsElements100way | lod=22 | score:300, srow:5224576 |
| 26825 | chr2 | 242435090 | 242435109 | phastConsElements100way | lod=142 | score:484, srow:5224577 |
| 26825 | chr2 | 242435111 | 242435119 | phastConsElements100way | lod=80 | score:427, srow:5224578 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26825 | cellmeth_recounts | PrEC: 21, LNCaP: 10, DU145: 18 |  |
| 26825 | cellmeth_diffreps_PrECvsLNCaP | A=58, B=2, Length=700, Event=Down, log2FC=-4.86, padj=6.57551416562261e-14 |  |
| 26825 | cellmeth_diffreps_PrECvsLNCaP | A=144, B=10, Length=1180, Event=Down, log2FC=-3.85, padj=0 |  |
| 26825 | cellmeth_diffreps_PrECvsDU145 | A=51, B=6, Length=420, Event=Down, log2FC=-3.09, padj=1.91742074575252e-08 |  |
| 26825 | cellexp | id=ENSG00000115694, name=STK25, PrEC=8409, str=7836, LNCaP=7962, str=5000, DU145=5102, str=3846 |  |
| 26825 | tcgameth | site:cg00723907, B=0.65, L=0.77, H=0.73 |  |
| 26825 | tcgameth | site:cg23098038, B=0.85, L=0.87, H=0.84 |  |
| 26825 | tcgaexp | gene=STK25, entrez=10494, pos=chr2:242434122-242448987(-), B=4684, L=5249, M=4941, H=5027 |  |