DMR 26832 chr2:242734951-242735100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:242734951-242735100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | GAL3ST2 (0bp away) |
| ANODEV p-value | 2.19625837766e-05 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26832 | GAL3ST2 | 17857 | uc002wcj.1 | chr2 | 242716240 | 242743702 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26832 | chr2 | 242734866 | 242735210 | wgEncodeRegDnaseClusteredV2 | 4 | score:353, srow:698637 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26832 | cellmeth_recounts | PrEC: 16, LNCaP: 26, DU145: 5 |  |
| 26832 | cellmeth_diffreps_PrECvsDU145 | A=56, B=8, Length=420, Event=Down, log2FC=-2.81, padj=2.08164891440464e-08 |  |
| 26832 | cellmeth_diffreps_LNCaPvsDU145 | A=29.93, B=4.68, Length=300, Event=Down, log2FC=-2.68, padj=0.000889001452581188 |  |
| 26832 | cellexp | id=ENSG00000154252, name=GAL3ST2, PrEC=0, str=0, LNCaP=24, str=11, DU145=3, str=2 |  |
| 26832 | tcgaexp | gene=GAL3ST2, entrez=64090, pos=chr2:242716240-242743702(+), B=3, L=4, M=4, H=5 |  |