DMR 26853 chr3:9594201-9594400 (200bp)

DMR Stats
Positionchr3:9594201-9594400 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesLHFPL4 (0bp away)
ANODEV p-value0.0402551802245
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26853 LHFPL4 19770 uc003bry.3 chr3 9540045 9595486 - 200 100.0 0.14 0 0.0 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26853 chr3 9593906 9595315 wgEncodeRegDnaseClusteredV2 95 score:1000, srow:784785
26853 chr3 9593787 9594326 wgEncodeRegTfbsClusteredV3 REST score:1000, expCount:12, expNums:59,98,144,167,188,189,226,248,252,257,258,274, expScores:1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000, srow:2727308
26853 chr3 9593797 9594470 wgEncodeRegTfbsClusteredV3 YY1 score:240, expCount:3, expNums:70,162,245, expScores:240,184,208, srow:2727309
26853 chr3 9593806 9594405 wgEncodeRegTfbsClusteredV3 CTBP2 score:152, expCount:1, expNums:348, expScores:152, srow:2727310
26853 chr3 9593820 9594315 wgEncodeRegTfbsClusteredV3 TCF7L2 score:914, expCount:2, expNums:363,573, expScores:342,914, srow:2727311
26853 chr3 9593853 9594288 wgEncodeRegTfbsClusteredV3 UBTF score:141, expCount:1, expNums:549, expScores:141, srow:2727312
26853 chr3 9593857 9594296 wgEncodeRegTfbsClusteredV3 CBX3 score:408, expCount:1, expNums:211, expScores:408, srow:2727314
26853 chr3 9593865 9594220 wgEncodeRegTfbsClusteredV3 TAF7 score:295, expCount:1, expNums:158, expScores:295, srow:2727315
26853 chr3 9593879 9594228 wgEncodeRegTfbsClusteredV3 HDAC2 score:258, expCount:2, expNums:27,141, expScores:164,258, srow:2727316
26853 chr3 9593883 9594234 wgEncodeRegTfbsClusteredV3 SIN3A score:1000, expCount:1, expNums:357, expScores:1000, srow:2727317
26853 chr3 9593897 9594226 wgEncodeRegTfbsClusteredV3 MAX score:519, expCount:2, expNums:223,352, expScores:519,127, srow:2727318
26853 chr3 9593916 9594211 wgEncodeRegTfbsClusteredV3 RCOR1 score:441, expCount:1, expNums:492, expScores:441, srow:2727321
26853 chr3 9593921 9594210 wgEncodeRegTfbsClusteredV3 ZNF143 score:638, expCount:2, expNums:361,552, expScores:638,539, srow:2727323
26853 chr3 9593924 9594233 wgEncodeRegTfbsClusteredV3 MYC score:261, expCount:1, expNums:626, expScores:261, srow:2727324
26853 chr3 9593987 9594656 wgEncodeRegTfbsClusteredV3 RBBP5 score:179, expCount:1, expNums:8, expScores:179, srow:2727326
26853 chr3 9594030 9594353 wgEncodeRegTfbsClusteredV3 BACH1 score:160, expCount:1, expNums:341, expScores:160, srow:2727329
26853 chr3 9594032 9594275 wgEncodeRegTfbsClusteredV3 EGR1 score:285, expCount:1, expNums:216, expScores:285, srow:2727330
26853 chr3 9594199 9594209 tfbsConsSites V$CP2_01 score:875, zScore:1.66, srow:3293617
26853 chr3 9594203 9594230 tfbsConsSites V$PAX5_02 score:770, zScore:1.8, srow:3293618
26853 chr3 9594204 9594222 tfbsConsSites V$AHRARNT_02 score:787, zScore:1.98, srow:3293619
26853 chr3 9594218 9594229 tfbsConsSites V$EGR3_01 score:831, zScore:1.84, srow:3293620
26853 chr3 9594225 9594233 tfbsConsSites V$HOXA3_01 score:961, zScore:2.58, srow:3293621
26853 chr3 9594244 9594252 tfbsConsSites V$ZIC2_01 score:905, zScore:2.02, srow:3293622
26853 chr3 9594264 9594279 tfbsConsSites V$TAL1ALPHAE47_01 score:875, zScore:1.91, srow:3293623
26853 chr3 9594264 9594279 tfbsConsSites V$TAL1BETAITF2_01 score:890, zScore:2.44, srow:3293624
  • Page 1 of 2
  • 25 of 45 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26853 cellmeth_recounts PrEC: 10, LNCaP: 404, DU145: 4
26853 cellmeth_diffreps_PrECvsLNCaP A=17, B=393, Length=740, Event=Up, log2FC=4.53, padj=0
26853 cellmeth_diffreps_LNCaPvsDU145 A=420.13, B=6.55, Length=720, Event=Down, log2FC=-6, padj=0
26853 cellexp id=ENSG00000156959, name=LHFPL4, PrEC=0, str=0, LNCaP=2, str=0, DU145=312, str=202
26853 tcgameth site:cg04061117, B=0.1, L=0.33, H=0.39
26853 tcgameth site:cg11084334, B=0.51, L=0.72, H=0.74
26853 tcgameth site:cg19099050, B=0.05, L=0.21, H=0.27
26853 tcgaexp gene=LHFPL4, entrez=375323, pos=chr3:9540045-9595486(-), B=28, L=10, M=36, H=18