DMR 26942 chr3:42814151-42814650 (500bp)

DMR Stats
Positionchr3:42814151-42814650 (View on UCSC)
Width500bp
Genomic Contextpromoter
Nearest GenesCCDC13 (0bp away)
ANODEV p-value4.93856573414e-09
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26942 CCDC13 20025 uc003cly.4 chr3 42749874 42814745 - 500 100.0 0.11 0 81.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) 0.0
26942 CCDC13 20025 uc003clz.2 chr3 42788286 42814745 - 500 100.0 0.11 0 81.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
26942 CCDC13 20025 uc011azq.1 chr3 42788749 42814745 - 500 100.0 0.13 0 81.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26942 chr3 42814106 42814390 wgEncodeRegDnaseClusteredV2 30 score:1000, srow:801086
26942 chr3 42814406 42814555 wgEncodeRegDnaseClusteredV2 2 score:283, srow:801087
26942 chr3 42814606 42815095 wgEncodeRegDnaseClusteredV2 116 score:1000, srow:801088
26942 chr3 42814062 42814441 wgEncodeRegTfbsClusteredV3 CHD2 score:159, expCount:1, expNums:288, expScores:159, srow:2778552
26942 chr3 42814088 42814417 wgEncodeRegTfbsClusteredV3 IRF4 score:208, expCount:1, expNums:92, expScores:208, srow:2778553
26942 chr3 42814133 42814423 wgEncodeRegTfbsClusteredV3 ELF1 score:924, expCount:1, expNums:88, expScores:924, srow:2778554
26942 chr3 42814153 42814376 wgEncodeRegTfbsClusteredV3 SPI1 score:1000, expCount:2, expNums:107,126, expScores:1000,999, srow:2778555
26942 chr3 42814343 42814931 wgEncodeRegTfbsClusteredV3 MAX score:405, expCount:4, expNums:223,352,460,576, expScores:210,149,147,405, srow:2778556
26942 chr3 42814403 42814726 wgEncodeRegTfbsClusteredV3 E2F6 score:261, expCount:1, expNums:215, expScores:261, srow:2778557
26942 chr3 42814461 42814996 wgEncodeRegTfbsClusteredV3 SIN3A score:915, expCount:2, expNums:312,357, expScores:380,915, srow:2778558
26942 chr3 42814465 42814834 wgEncodeRegTfbsClusteredV3 RUNX3 score:335, expCount:1, expNums:109, expScores:335, srow:2778559
26942 chr3 42814475 42814994 wgEncodeRegTfbsClusteredV3 FOXM1 score:276, expCount:1, expNums:90, expScores:276, srow:2778560
26942 chr3 42814478 42815058 wgEncodeRegTfbsClusteredV3 ATF2 score:298, expCount:2, expNums:79,134, expScores:295,298, srow:2778561
26942 chr3 42814488 42815237 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:22, expNums:104,105,123,124,130,131,259,283,306,307,326,328,330,332,334,336,338,340,577,583,585,602, expScores:846,1000,365,505,264,539,284,165,746,175,1000,830,425,898,391,652,685,893,319,656,466,197, srow:2778562
26942 chr3 42814503 42814802 wgEncodeRegTfbsClusteredV3 ZNF143 score:554, expCount:2, expNums:322,361, expScores:554,179, srow:2778563
26942 chr3 42814520 42814989 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:390, expCount:3, expNums:151,250,260, expScores:390,108,213, srow:2778564
26942 chr3 42814523 42814982 wgEncodeRegTfbsClusteredV3 RELA score:299, expCount:2, expNums:282,329, expScores:231,299, srow:2778565
26942 chr3 42814524 42814874 wgEncodeRegTfbsClusteredV3 ELF1 score:309, expCount:1, expNums:88, expScores:309, srow:2778566
26942 chr3 42814526 42815181 wgEncodeRegTfbsClusteredV3 E2F1 score:766, expCount:1, expNums:572, expScores:766, srow:2778567
26942 chr3 42814546 42814981 wgEncodeRegTfbsClusteredV3 MXI1 score:1000, expCount:4, expNums:298,353,441,513, expScores:1000,786,317,395, srow:2778568
26942 chr3 42814549 42814824 wgEncodeRegTfbsClusteredV3 SPI1 score:394, expCount:3, expNums:107,126,230, expScores:363,394,168, srow:2778569
26942 chr3 42814574 42814877 wgEncodeRegTfbsClusteredV3 FOXP2 score:225, expCount:1, expNums:251, expScores:225, srow:2778570
26942 chr3 42814579 42814942 wgEncodeRegTfbsClusteredV3 RFX5 score:1000, expCount:4, expNums:311,356,449,530, expScores:1000,1000,828,407, srow:2778571
26942 chr3 42814579 42814962 wgEncodeRegTfbsClusteredV3 MYC score:191, expCount:1, expNums:487, expScores:191, srow:2778572
26942 chr3 42814586 42815075 wgEncodeRegTfbsClusteredV3 TAF1 score:506, expCount:5, expNums:115,127,132,157,261, expScores:490,506,152,161,268, srow:2778573
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  • 25 of 35 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26942 cellmeth_recounts PrEC: 5, LNCaP: 94, DU145: 3
26942 cellmeth_diffreps_PrECvsLNCaP A=3, B=94, Length=840, Event=Up, log2FC=4.97, padj=0
26942 cellmeth_diffreps_LNCaPvsDU145 A=100.49, B=4.68, Length=780, Event=Down, log2FC=-4.43, padj=0
26942 cellexp id=ENSG00000181061, name=HIGD1A, PrEC=8231, str=8426, LNCaP=2897, str=6604, DU145=3093, str=5093
26942 cellexp id=ENSG00000225611, name=RP11-70C1.1, PrEC=0, str=2, LNCaP=0, str=0, DU145=1, str=2
26942 cellexp id=ENSG00000244607, name=CCDC13, PrEC=10, str=5, LNCaP=5, str=4, DU145=4, str=3
26942 tcgameth site:cg06593715, B=0.24, L=0.5, H=0.5
26942 tcgaexp gene=CCDC13, entrez=152206, pos=chr3:42749874-42814745(-), B=40, L=23, M=21, H=19