DMR 26963 chr3:47050401-47052000 (1600bp)
| DMR Stats | |
|---|---|
| Position | chr3:47050401-47052000 (View on UCSC) |
| Width | 1600bp |
| Genomic Context | 3' end |
| Nearest Genes | NBEAL2 (0bp away) |
| ANODEV p-value | 0.000536243934704 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26963 | NBEAL2 | 20094 | uc003cqp.3 | chr3 | 47021173 | 47051194 | + | 794 | 49.62 | 1.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (0), E39 (0), I39 (0), E40 (0), I40 (0), E41 (0), I41 (0), E42 (0), I42 (0), E43 (0), I43 (0), E44 (0), I44 (0), E45 (0), I45 (0), E46 (0), I46 (0), E47 (0), I47 (0), E48 (0), I48 (0), E49 (0), I49 (0), E50 (0), I50 (0), E51 (0), I51 (0), E52 (0), I52 (4.88), E53 (8.5), I53 (5.94), E54 (30.38) | 100.0 |
| 26963 | NBEAL2 | 20094 | uc010hjm.2 | chr3 | 47036522 | 47051194 | + | 794 | 49.62 | 0.35 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (4.88), E39 (8.5), I39 (5.94), E40 (30.38) | 100.0 |
| 26963 | NBEAL2 | 20094 | uc010hjn.2 | chr3 | 47043410 | 47051194 | + | 794 | 49.62 | 0.35 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (4.88), E22 (8.5), I22 (5.94), E23 (30.38) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26963 | chr3 | 47050326 | 47050635 | wgEncodeRegDnaseClusteredV2 | 8 | score:367, srow:804149 |
| 26963 | chr3 | 47050766 | 47052215 | wgEncodeRegDnaseClusteredV2 | 111 | score:1000, srow:804150 |
| 26963 | chr3 | 47050329 | 47051681 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:888, expCount:25, expNums:61,104,123,146,147,206,207,259,275,283,306,326,328,330,332,334,336,338,340,461,465,583,610,619,637, expScores:241,365,385,274,557,154,888,675,434,123,321,543,200,300,588,270,773,590,754,318,348,348,214,386,234, srow:2789158 |
| 26963 | chr3 | 47050728 | 47051163 | wgEncodeRegTfbsClusteredV3 | MAZ | score:564, expCount:1, expNums:297, expScores:564, srow:2789159 |
| 26963 | chr3 | 47050749 | 47051128 | wgEncodeRegTfbsClusteredV3 | NFYB | score:609, expCount:1, expNums:302, expScores:609, srow:2789160 |
| 26963 | chr3 | 47050752 | 47051007 | wgEncodeRegTfbsClusteredV3 | HDAC2 | score:162, expCount:1, expNums:141, expScores:162, srow:2789161 |
| 26963 | chr3 | 47050763 | 47051142 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:217, expCount:1, expNums:288, expScores:217, srow:2789162 |
| 26963 | chr3 | 47050775 | 47051044 | wgEncodeRegTfbsClusteredV3 | REST | score:141, expCount:1, expNums:257, expScores:141, srow:2789163 |
| 26963 | chr3 | 47050779 | 47051129 | wgEncodeRegTfbsClusteredV3 | SP1 | score:262, expCount:2, expNums:112,153, expScores:262,164, srow:2789164 |
| 26963 | chr3 | 47050802 | 47051157 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:170, expCount:1, expNums:83, expScores:170, srow:2789165 |
| 26963 | chr3 | 47050829 | 47051204 | wgEncodeRegTfbsClusteredV3 | TBP | score:262, expCount:1, expNums:359, expScores:262, srow:2789166 |
| 26963 | chr3 | 47050832 | 47051187 | wgEncodeRegTfbsClusteredV3 | TAF7 | score:176, expCount:1, expNums:158, expScores:176, srow:2789167 |
| 26963 | chr3 | 47050833 | 47051148 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:263, expCount:2, expNums:86,292, expScores:263,163, srow:2789168 |
| 26963 | chr3 | 47050848 | 47051196 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:307, expCount:2, expNums:157,261, expScores:307,295, srow:2789169 |
| 26963 | chr3 | 47050852 | 47051087 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:163, expCount:1, expNums:466, expScores:163, srow:2789170 |
| 26963 | chr3 | 47050871 | 47051214 | wgEncodeRegTfbsClusteredV3 | YY1 | score:163, expCount:1, expNums:119, expScores:163, srow:2789171 |
| 26963 | chr3 | 47050885 | 47051254 | wgEncodeRegTfbsClusteredV3 | RELA | score:209, expCount:1, expNums:325, expScores:209, srow:2789172 |
| 26963 | chr3 | 47050891 | 47051326 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:258, expCount:1, expNums:298, expScores:258, srow:2789173 |
| 26963 | chr3 | 47050896 | 47051052 | wgEncodeRegTfbsClusteredV3 | GABPA | score:522, expCount:1, expNums:91, expScores:522, srow:2789174 |
| 26963 | chr3 | 47050903 | 47051258 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:164, expCount:1, expNums:260, expScores:164, srow:2789175 |
| 26963 | chr3 | 47050909 | 47051040 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:298, expCount:1, expNums:88, expScores:298, srow:2789176 |
| 26963 | chr3 | 47050913 | 47051029 | wgEncodeRegTfbsClusteredV3 | PBX3 | score:491, expCount:1, expNums:102, expScores:491, srow:2789177 |
| 26963 | chr3 | 47051374 | 47051696 | wgEncodeRegTfbsClusteredV3 | CTCF | score:197, expCount:7, expNums:597,603,606,607,675,676,677, expScores:167,114,197,132,124,139,134, srow:2789178 |
| 26963 | chr3 | 47051791 | 47052151 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:291, expCount:1, expNums:130, expScores:291, srow:2789179 |
| 26963 | chr3 | 47050528 | 47050540 | tfbsConsSites | V$PAX3_01 | score:815, zScore:2.05, srow:3349790 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26963 | cellmeth_recounts | PrEC: 72, LNCaP: 247, DU145: 59 |  |
| 26963 | cellmeth_diffreps_PrECvsLNCaP | A=14, B=127, Length=940, Event=Up, log2FC=3.18, padj=0 |  |
| 26963 | cellmeth_diffreps_PrECvsLNCaP | A=70, B=26, Length=260, Event=Down, log2FC=-1.43, padj=0.000215889364066135 |  |
| 26963 | cellmeth_diffreps_PrECvsDU145 | A=75, B=11, Length=420, Event=Down, log2FC=-2.77, padj=3.57257983770908e-11 |  |
| 26963 | cellmeth_diffreps_LNCaPvsDU145 | A=52.38, B=4.68, Length=400, Event=Down, log2FC=-3.49, padj=3.11976339650403e-09 |  |
| 26963 | cellmeth_diffreps_LNCaPvsDU145 | A=156.08, B=27.13, Length=1040, Event=Down, log2FC=-2.52, padj=0 |  |
| 26963 | cellexp | id=ENSG00000160796, name=NBEAL2, PrEC=7614, str=4018, LNCaP=6296, str=3825, DU145=5148, str=4386 |  |
| 26963 | tcgameth | site:cg09354556, B=0.18, L=0.56, H=0.55 |  |
| 26963 | tcgameth | site:cg13451127, B=0.2, L=0.53, H=0.47 |  |
| 26963 | tcgaexp | gene=NBEAL2, entrez=23218, pos=chr3:47021173-47051194(+), B=2032, L=2376, M=2308, H=2672 |  |