DMR 27025 chr3:62353351-62355050 (1700bp)

DMR Stats
Positionchr3:62353351-62355050 (View on UCSC)
Width1700bp
Genomic Context3' end
Nearest GenesFEZF2 (296bp away)
ANODEV p-value5.67500263808e-05
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27025 chr3 62353206 62353675 wgEncodeRegDnaseClusteredV2 12 score:251, srow:812717
27025 chr3 62353761 62354095 wgEncodeRegDnaseClusteredV2 5 score:178, srow:812718
27025 chr3 62354401 62355435 wgEncodeRegDnaseClusteredV2 31 score:728, srow:812719
27025 chr3 62353321 62354457 wgEncodeRegTfbsClusteredV3 SUZ12 score:165, expCount:2, expNums:358,578, expScores:93,125, srow:2818543
27025 chr3 62353512 62355462 wgEncodeRegTfbsClusteredV3 EZH2 score:852, expCount:6, expNums:6,21,36,38,40,43, expScores:403,314,303,298,304,479, srow:2818544
27025 chr3 62354097 62354332 wgEncodeRegTfbsClusteredV3 MYC score:275, expCount:1, expNums:623, expScores:275, srow:2818545
27025 chr3 62354334 62354849 wgEncodeRegTfbsClusteredV3 TCF7L2 score:192, expCount:1, expNums:367, expScores:192, srow:2818546
27025 chr3 62354344 62354753 wgEncodeRegTfbsClusteredV3 GATA2 score:344, expCount:1, expNums:586, expScores:344, srow:2818547
27025 chr3 62354558 62354867 wgEncodeRegTfbsClusteredV3 EP300 score:225, expCount:1, expNums:145, expScores:225, srow:2818548
27025 chr3 62354623 62355013 wgEncodeRegTfbsClusteredV3 CTCF score:571, expCount:21, expNums:5,14,18,137,213,262,595,597,609,635,639,645,661,669,671,675,683,685,686,687,688, expScores:454,75,128,571,133,140,291,271,354,407,116,138,153,125,186,123,157,118,170,288,274, srow:2818549
27025 chr3 62354635 62354910 wgEncodeRegTfbsClusteredV3 EGR1 score:150, expCount:1, expNums:138, expScores:150, srow:2818550
27025 chr3 62354638 62354881 wgEncodeRegTfbsClusteredV3 RAD21 score:536, expCount:2, expNums:149,355, expScores:536,241, srow:2818551
27025 chr3 62354644 62354893 wgEncodeRegTfbsClusteredV3 FOSL1 score:136, expCount:1, expNums:139, expScores:136, srow:2818552
27025 chr3 62354691 62355066 wgEncodeRegTfbsClusteredV3 TBP score:349, expCount:1, expNums:359, expScores:349, srow:2818553
27025 chr3 62354752 62354955 wgEncodeRegTfbsClusteredV3 MYC score:258, expCount:1, expNums:625, expScores:258, srow:2818554
27025 chr3 62354899 62355208 wgEncodeRegTfbsClusteredV3 SUZ12 score:95, expCount:1, expNums:358, expScores:95, srow:2818555
27025 chr3 62354959 62355248 wgEncodeRegTfbsClusteredV3 ZNF143 score:167, expCount:1, expNums:361, expScores:167, srow:2818556
27025 chr3 62354982 62355365 wgEncodeRegTfbsClusteredV3 POLR2A score:291, expCount:1, expNums:632, expScores:291, srow:2818557
27025 chr3 62354989 62355218 wgEncodeRegTfbsClusteredV3 SRF score:431, expCount:1, expNums:156, expScores:431, srow:2818558
27025 chr3 62353556 62353568 tfbsConsSites V$CHOP_01 score:827, zScore:1.65, srow:3397976
27025 chr3 62353677 62353697 tfbsConsSites V$STAT1_01 score:781, zScore:2.08, srow:3397977
27025 chr3 62353686 62353703 tfbsConsSites V$IRF7_01 score:842, zScore:2.54, srow:3397978
27025 chr3 62353710 62353731 tfbsConsSites V$MEF2_02 score:779, zScore:1.74, srow:3397979
27025 chr3 62353732 62353747 tfbsConsSites V$RSRFC4_01 score:852, zScore:2.58, srow:3397980
27025 chr3 62353733 62353748 tfbsConsSites V$MEF2_01 score:854, zScore:3.67, srow:3397981
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Omics Overlaps

Dmrid Omic Set Data Plot
27025 cellmeth_recounts PrEC: 5, LNCaP: 229, DU145: 19
27025 cellmeth_diffreps_PrECvsLNCaP A=0, B=18, Length=340, Event=Up, log2FC=Inf, padj=3.04238490738774e-05
27025 cellmeth_diffreps_PrECvsLNCaP A=5, B=103, Length=660, Event=Up, log2FC=4.36, padj=0
27025 cellmeth_diffreps_PrECvsLNCaP A=1, B=53, Length=420, Event=Up, log2FC=5.73, padj=9.10930156099321e-14
27025 cellmeth_diffreps_LNCaPvsDU145 A=165.7, B=4.68, Length=1080, Event=Down, log2FC=-5.15, padj=0
27025 cellexp id=ENSG00000241472, name=PTPRG-AS1, PrEC=217, str=16, LNCaP=2, str=1, DU145=149, str=251
27025 tcgameth site:cg06327727, B=0.13, L=0.34, H=0.33
27025 tcgameth site:cg11602901, B=0.23, L=0.43, H=0.46
27025 tcgameth site:cg22618215, B=0.33, L=0.54, H=0.52
27025 tcgameth site:cg24008577, B=0.26, L=0.51, H=0.5
27025 tcgameth site:cg27088150, B=0.16, L=0.45, H=0.41