DMR 27043 chr3:68980351-68981250 (900bp)
| DMR Stats | |
|---|---|
| Position | chr3:68980351-68981250 (View on UCSC) |
| Width | 900bp |
| Genomic Context | intron |
| Nearest Genes | FAM19A4 (0bp away) |
| ANODEV p-value | 2.89048551176e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27043 | FAM19A4 | 20355 | uc021xag.1 | chr3 | 68780915 | 68981761 | - | 900 | 100.0 | 1.36 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 27043 | FAM19A4 | 20355 | uc021xah.1 | chr3 | 68780915 | 68981761 | - | 900 | 100.0 | 0.69 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27043 | chr3 | 68980106 | 68980450 | wgEncodeRegDnaseClusteredV2 | 5 | score:159, srow:815185 |
| 27043 | chr3 | 68980506 | 68981255 | wgEncodeRegDnaseClusteredV2 | 22 | score:247, srow:815186 |
| 27043 | chr3 | 68980447 | 68982019 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:607, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:314,288,112,607,321,295,304,260, srow:2824663 |
| 27043 | chr3 | 68980848 | 68981657 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:186, expCount:1, expNums:578, expScores:186, srow:2824664 |
| 27043 | chr3 | 68980367 | 68980379 | tfbsConsSites | V$NKX61_01 | score:828, zScore:1.7, srow:3416146 |
| 27043 | chr3 | 68980514 | 68980522 | tfbsConsSites | V$AP1_C | score:926, zScore:1.73, srow:3416147 |
| 27043 | chr3 | 68980602 | 68980612 | tfbsConsSites | V$CP2_01 | score:885, zScore:1.83, srow:3416148 |
| 27043 | chr3 | 68980618 | 68980629 | tfbsConsSites | V$LMO2COM_01 | score:924, zScore:1.78, srow:3416149 |
| 27043 | chr3 | 68980618 | 68980629 | tfbsConsSites | V$AREB6_03 | score:917, zScore:2.34, srow:3416150 |
| 27043 | chr3 | 68980775 | 68980785 | tfbsConsSites | V$BACH2_01 | score:897, zScore:2.23, srow:3416151 |
| 27043 | chr3 | 68981122 | 68981139 | tfbsConsSites | V$IRF7_01 | score:822, zScore:2.14, srow:3416152 |
| 27043 | chr3 | 68980362 | 68980366 | phastConsElements100way | lod=15 | score:262, srow:5911598 |
| 27043 | chr3 | 68980376 | 68980384 | phastConsElements100way | lod=15 | score:262, srow:5911599 |
| 27043 | chr3 | 68981187 | 68981191 | phastConsElements100way | lod=20 | score:290, srow:5911600 |
| 27043 | chr3 | 68980784 | 68982035 | cpgIsland | CpG: 105 | length:1252, cpgNum:105, gcNum:818, perCpg:16.8, perGc:65.3, obsExp:0.8, srow:18673 |
| 27043 | chr3 | 68978784 | 68980783 | cpgShore | — | values(x.gr)[overs$srow, ]:33716 |
- 16 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27043 | cellmeth_recounts | PrEC: 0, LNCaP: 50, DU145: 8 |  |
| 27043 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=22, Length=400, Event=Up, log2FC=Inf, padj=2.04501321634913e-06 |  |
| 27043 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=12, Length=260, Event=Up, log2FC=Inf, padj=0.00157949948552458 |  |
| 27043 | cellmeth_diffreps_LNCaPvsDU145 | A=23.52, B=0, Length=400, Event=Down, log2FC=-Inf, padj=3.14874812374474e-06 |  |
| 27043 | cellexp | id=ENSG00000163377, name=FAM19A4, PrEC=1, str=2, LNCaP=80, str=83, DU145=32, str=22 |  |
| 27043 | tcgameth | site:cg01405004, B=0.22, L=0.57, H=0.57 |  |
| 27043 | tcgaexp | gene=FAM19A4, entrez=151647, pos=chr3:68780915-68981761(-), B=74, L=80, M=86, H=60 |  |