DMR 27097 chr3:122296301-122296950 (650bp)

DMR Stats
Positionchr3:122296301-122296950 (View on UCSC)
Width650bp
Genomic Contextpromoter
Nearest GenesPARP15 (0bp away)
ANODEV p-value2.79507872045e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27097 PARP15 20616 uc003efm.2 chr3 122296449 122355536 + 502 77.23 0.34 0 99.69 E1 (38.77), I1 (38.62), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
27097 PARP15 20616 uc003efn.2 chr3 122296449 122355536 + 502 77.23 0.19 0 99.69 E1 (38.77), I1 (38.62), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27097 chr3 122296341 122296875 wgEncodeRegDnaseClusteredV2 43 score:428, srow:829674
27097 chr3 122296172 122296933 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:18, expNums:104,105,123,124,130,131,283,306,326,328,330,332,334,336,338,340,583,602, expScores:658,1000,379,524,550,738,125,565,667,786,652,1000,349,688,472,769,532,354, srow:2869358
27097 chr3 122296257 122296692 wgEncodeRegTfbsClusteredV3 MAX score:178, expCount:1, expNums:296, expScores:178, srow:2869359
27097 chr3 122296267 122296792 wgEncodeRegTfbsClusteredV3 TBP score:385, expCount:2, expNums:317,359, expScores:213,385, srow:2869360
27097 chr3 122296277 122296696 wgEncodeRegTfbsClusteredV3 BCLAF1 score:225, expCount:1, expNums:84, expScores:225, srow:2869361
27097 chr3 122296293 122296722 wgEncodeRegTfbsClusteredV3 TAF1 score:272, expCount:3, expNums:115,127,132, expScores:152,272,177, srow:2869362
27097 chr3 122296366 122296810 wgEncodeRegTfbsClusteredV3 YY1 score:238, expCount:3, expNums:119,128,133, expScores:238,172,223, srow:2869363
27097 chr3 122296391 122296502 wgEncodeRegTfbsClusteredV3 RUNX3 score:332, expCount:1, expNums:109, expScores:332, srow:2869364
27097 chr3 122296452 122296891 wgEncodeRegTfbsClusteredV3 UBTF score:134, expCount:1, expNums:548, expScores:134, srow:2869365
27097 chr3 122296472 122296907 wgEncodeRegTfbsClusteredV3 MAZ score:184, expCount:1, expNums:297, expScores:184, srow:2869366
27097 chr3 122296498 122296861 wgEncodeRegTfbsClusteredV3 ELF1 score:213, expCount:1, expNums:88, expScores:213, srow:2869367
27097 chr3 122296630 122297061 wgEncodeRegTfbsClusteredV3 CTCF score:465, expCount:14, expNums:0,2,290,603,604,605,606,607,640,642,657,659,661,662, expScores:284,104,218,297,465,328,242,354,138,128,132,244,156,169, srow:2869368
27097 chr3 122296505 122296524 tfbsConsSites V$YY1_02 score:820, zScore:2.63, srow:3530437
27097 chr3 122296629 122296642 tfbsConsSites V$P300_01 score:905, zScore:2.76, srow:3530438
27097 chr3 122296640 122296660 tfbsConsSites V$STAT1_01 score:758, zScore:1.72, srow:3530439
27097 chr3 122296673 122296696 tfbsConsSites V$STAT5A_02 score:788, zScore:2.45, srow:3530440
27097 chr3 122296638 122296638 cosmic COSM445418 srow:847406
27097 chr3 122296675 122296675 cosmic COSM445419 srow:847407
27097 chr3 122296588 122296595 phastConsElements100way lod=13 score:247, srow:6086594
27097 chr3 122296604 122296611 phastConsElements100way lod=22 score:300, srow:6086595
27097 chr3 122296700 122296705 phastConsElements100way lod=24 score:308, srow:6086596
27097 chr3 122296613 122296828 cpgIsland CpG: 25 length:216, cpgNum:25, gcNum:161, perCpg:23.1, perGc:74.5, obsExp:0.85, srow:18820
27097 chr3 122294613 122296612 cpgShore — values(x.gr)[overs$srow, ]:34006
27097 chr3 122296829 122298828 cpgShore — values(x.gr)[overs$srow, ]:34007
  • 24 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27097 cellmeth_recounts PrEC: 1, LNCaP: 33, DU145: 9
27097 cellmeth_diffreps_PrECvsLNCaP A=0, B=23, Length=400, Event=Up, log2FC=Inf, padj=1.03838484522092e-06
27097 cellmeth_diffreps_LNCaPvsDU145 A=24.59, B=0.94, Length=360, Event=Down, log2FC=-4.72, padj=3.90892111291609e-05
27097 cellexp id=ENSG00000173200, name=PARP15, PrEC=20, str=30, LNCaP=1, str=0, DU145=0, str=2
27097 tcgameth site:cg02346790, B=0.81, L=0.84, H=0.84
27097 tcgameth site:cg03840504, B=0.38, L=0.55, H=0.54
27097 tcgameth site:cg04564920, B=0.21, L=0.6, H=0.57
27097 tcgameth site:cg18016254, B=0.33, L=0.64, H=0.62
27097 tcgameth site:cg19166302, B=0.26, L=0.67, H=0.63
27097 tcgameth site:cg22821981, B=0.54, L=0.73, H=0.72
27097 tcgameth site:cg23442853, B=0.43, L=0.56, H=0.55
27097 tcgaexp gene=PARP15, entrez=165631, pos=chr3:122296449-122355536(+), B=15, L=12, M=15, H=25