DMR 27108 chr3:124860351-124861100 (750bp)

DMR Stats
Positionchr3:124860351-124861100 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesSLC12A8 (0bp away)
ANODEV p-value3.34240443869e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27108 SLC12A8 20639 uc003ehv.4 chr3 124801480 124931609 - 750 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc003ehw.4 chr3 124801480 124998091 - 750 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc010hrz.1 chr3 124837613 124931609 - 750 100.0 0.35 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27108 chr3 124860326 124861315 wgEncodeRegDnaseClusteredV2 89 score:1000, srow:831610
27108 chr3 124860142 124860552 wgEncodeRegTfbsClusteredV3 EBF1 score:1000, expCount:2, expNums:86,292, expScores:1000,436, srow:2874502
27108 chr3 124860147 124860851 wgEncodeRegTfbsClusteredV3 NFIC score:1000, expCount:1, expNums:97, expScores:1000, srow:2874503
27108 chr3 124860192 124860832 wgEncodeRegTfbsClusteredV3 MAZ score:377, expCount:1, expNums:297, expScores:213, srow:2874504
27108 chr3 124860203 124860718 wgEncodeRegTfbsClusteredV3 CEBPB score:347, expCount:1, expNums:85, expScores:347, srow:2874505
27108 chr3 124860229 124861028 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:1000, srow:2874506
27108 chr3 124860229 124860669 wgEncodeRegTfbsClusteredV3 RELA score:448, expCount:8, expNums:282,300,325,327,329,335,337,339, expScores:359,249,448,128,255,253,308,427, srow:2874507
27108 chr3 124860241 124860720 wgEncodeRegTfbsClusteredV3 MTA3 score:418, expCount:1, expNums:95, expScores:418, srow:2874508
27108 chr3 124860245 124860520 wgEncodeRegTfbsClusteredV3 ZBTB33 score:132, expCount:1, expNums:120, expScores:132, srow:2874509
27108 chr3 124860246 124860575 wgEncodeRegTfbsClusteredV3 BHLHE40 score:430, expCount:1, expNums:284, expScores:430, srow:2874510
27108 chr3 124860259 124860722 wgEncodeRegTfbsClusteredV3 FOXM1 score:928, expCount:1, expNums:90, expScores:928, srow:2874511
27108 chr3 124860269 124860612 wgEncodeRegTfbsClusteredV3 YY1 score:190, expCount:1, expNums:119, expScores:190, srow:2874512
27108 chr3 124860279 124860688 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:887, expCount:1, expNums:316, expScores:887, srow:2874513
27108 chr3 124860280 124860659 wgEncodeRegTfbsClusteredV3 CHD2 score:188, expCount:1, expNums:288, expScores:188, srow:2874514
27108 chr3 124860287 124860693 wgEncodeRegTfbsClusteredV3 STAT5A score:622, expCount:1, expNums:114, expScores:622, srow:2874515
27108 chr3 124860291 124860600 wgEncodeRegTfbsClusteredV3 POU2F2 score:715, expCount:2, expNums:106,125, expScores:715,379, srow:2874516
27108 chr3 124860293 124860682 wgEncodeRegTfbsClusteredV3 EP300 score:493, expCount:3, expNums:99,304,305, expScores:408,493,385, srow:2874517
27108 chr3 124860321 124860659 wgEncodeRegTfbsClusteredV3 PML score:334, expCount:1, expNums:103, expScores:334, srow:2874518
27108 chr3 124860326 124860631 wgEncodeRegTfbsClusteredV3 BCL3 score:339, expCount:1, expNums:83, expScores:339, srow:2874519
27108 chr3 124860328 124860667 wgEncodeRegTfbsClusteredV3 ATF2 score:610, expCount:1, expNums:79, expScores:610, srow:2874520
27108 chr3 124860331 124860570 wgEncodeRegTfbsClusteredV3 SPI1 score:249, expCount:1, expNums:126, expScores:249, srow:2874521
27108 chr3 124860341 124860642 wgEncodeRegTfbsClusteredV3 MEF2A score:1000, expCount:1, expNums:93, expScores:1000, srow:2874522
27108 chr3 124860342 124860646 wgEncodeRegTfbsClusteredV3 ELF1 score:462, expCount:1, expNums:88, expScores:462, srow:2874523
27108 chr3 124860345 124860633 wgEncodeRegTfbsClusteredV3 MEF2C score:1000, expCount:1, expNums:94, expScores:1000, srow:2874524
27108 chr3 124860347 124860568 wgEncodeRegTfbsClusteredV3 BATF score:918, expCount:1, expNums:81, expScores:918, srow:2874525
  • Page 1 of 3
  • 25 of 68 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27108 cellmeth_recounts PrEC: 25, LNCaP: 285, DU145: 17
27108 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=280, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
27108 cellmeth_diffreps_PrECvsLNCaP A=33, B=205, Length=640, Event=Up, log2FC=2.64, padj=0
27108 cellmeth_diffreps_LNCaPvsDU145 A=241.6, B=12.16, Length=940, Event=Down, log2FC=-4.31, padj=0
27108 cellexp id=ENSG00000221955, name=SLC12A8, PrEC=1006, str=1530, LNCaP=2202, str=1700, DU145=756, str=610
27108 tcgameth site:cg12788878, B=0.26, L=0.53, H=0.52
27108 tcgameth site:cg26107890, B=0.32, L=0.74, H=0.72
27108 tcgameth site:cg26125625, B=0.26, L=0.5, H=0.48
27108 tcgaexp gene=SLC12A8, entrez=84561, pos=chr3:124801480-124998091(-), B=668, L=1221, M=1227, H=1315