DMR 27206 chr3:142683051-142683350 (300bp)

DMR Stats
Positionchr3:142683051-142683350 (View on UCSC)
Width300bp
Genomic Contextpromoter
Nearest GenesPAQR9 (872bp away)
ANODEV p-value1.87223150871e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27206 chr3 142682106 142683715 wgEncodeRegDnaseClusteredV2 76 score:1000, srow:841300
27206 chr3 142682299 142683378 wgEncodeRegTfbsClusteredV3 RBBP5 score:334, expCount:2, expNums:8,33, expScores:300,334, srow:2902265
27206 chr3 142682517 142683324 wgEncodeRegTfbsClusteredV3 TAF1 score:369, expCount:3, expNums:157,199,238, expScores:154,369,152, srow:2902273
27206 chr3 142682829 142683458 wgEncodeRegTfbsClusteredV3 EZH2 score:338, expCount:3, expNums:15,40,43, expScores:241,338,296, srow:2902277
27206 chr3 142682830 142683105 wgEncodeRegTfbsClusteredV3 ELF1 score:170, expCount:1, expNums:217, expScores:170, srow:2902278
27206 chr3 142682866 142683052 wgEncodeRegTfbsClusteredV3 ZBTB7A score:286, expCount:1, expNums:247, expScores:286, srow:2902279
27206 chr3 142683167 142683179 tfbsConsSites V$AREB6_01 score:936, zScore:2.6, srow:3572823
27206 chr3 142683170 142683179 tfbsConsSites V$HMX1_01 score:827, zScore:1.96, srow:3572824
27206 chr3 142683171 142683182 tfbsConsSites V$CREBP1_Q2 score:871, zScore:2.23, srow:3572825
27206 chr3 142683172 142683182 tfbsConsSites V$BACH2_01 score:907, zScore:2.4, srow:3572826
27206 chr3 142683172 142683182 tfbsConsSites V$AP1FJ_Q2 score:910, zScore:1.77, srow:3572827
27206 chr3 142683173 142683184 tfbsConsSites V$CREB_02 score:861, zScore:1.85, srow:3572828
27206 chr3 142683169 142683180 phastConsElements100way lod=50 score:381, srow:6160623
27206 chr3 142681138 142683268 cpgIsland CpG: 206 length:2131, cpgNum:206, gcNum:1321, perCpg:19.3, perGc:62, obsExp:1.02, srow:19024
27206 chr3 142683269 142685268 cpgShore — values(x.gr)[overs$srow, ]:34394
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27206 cellmeth_recounts PrEC: 0, LNCaP: 1273, DU145: 36
27206 cellmeth_diffreps_PrECvsLNCaP A=0, B=1018, Length=700, Event=Up, log2FC=Inf, padj=0
27206 cellmeth_diffreps_PrECvsDU145 A=0, B=26, Length=420, Event=Up, log2FC=Inf, padj=1.82506503014393e-07
27206 cellmeth_diffreps_LNCaPvsDU145 A=1088.29, B=27.13, Length=680, Event=Down, log2FC=-5.33, padj=0
27206 cellexp id=ENSG00000163714, name=U2SURP, PrEC=11521, str=7738, LNCaP=5487, str=8391, DU145=11099, str=17084
27206 cellexp id=ENSG00000241570, name=RP11-372E1.6, PrEC=0, str=0, LNCaP=2, str=1, DU145=14, str=7
27206 tcgameth site:cg00970325, B=0.17, L=0.47, H=0.53
27206 tcgameth site:cg08113027, B=0.53, L=0.76, H=0.74
27206 tcgameth site:cg08784462, B=0.11, L=0.33, H=0.3