DMR 27327 chr3:193775951-193776400 (450bp)

DMR Stats
Positionchr3:193775951-193776400 (View on UCSC)
Width450bp
Genomic Contextintron
Nearest GenesBC038368 (0bp away)
ANODEV p-value3.47557137885e-08
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27327 BC038368 21168 uc003ftp.3 chr3 193766709 193787318 - 450 100.0 4.14 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27327 chr3 193775706 193776455 wgEncodeRegDnaseClusteredV2 102 score:771, srow:861014
27327 chr3 193775566 193776109 wgEncodeRegTfbsClusteredV3 NFIC score:216, expCount:1, expNums:187, expScores:216, srow:2974517
27327 chr3 193775923 193776412 wgEncodeRegTfbsClusteredV3 TAF1 score:161, expCount:1, expNums:157, expScores:161, srow:2974518
27327 chr3 193775934 193776479 wgEncodeRegTfbsClusteredV3 POLR2A score:539, expCount:7, expNums:191,192,336,338,340,445,446, expScores:539,440,281,243,363,139,209, srow:2974519
27327 chr3 193775980 193776403 wgEncodeRegTfbsClusteredV3 RELA score:223, expCount:2, expNums:325,329, expScores:223,169, srow:2974520
27327 chr3 193776013 193776377 wgEncodeRegTfbsClusteredV3 RAD21 score:285, expCount:3, expNums:149,193,355, expScores:285,193,166, srow:2974521
27327 chr3 193776017 193776351 wgEncodeRegTfbsClusteredV3 MAX score:319, expCount:3, expNums:223,352,460, expScores:319,138,154, srow:2974522
27327 chr3 193776032 193776407 wgEncodeRegTfbsClusteredV3 TBP score:144, expCount:1, expNums:359, expScores:144, srow:2974523
27327 chr3 193776034 193776283 wgEncodeRegTfbsClusteredV3 TEAD4 score:241, expCount:1, expNums:160, expScores:241, srow:2974524
27327 chr3 193776052 193776436 wgEncodeRegTfbsClusteredV3 YY1 score:270, expCount:2, expNums:203,245, expScores:270,160, srow:2974525
27327 chr3 193776059 193776399 wgEncodeRegTfbsClusteredV3 HDAC2 score:206, expCount:2, expNums:141,181, expScores:166,206, srow:2974526
27327 chr3 193776116 193776411 wgEncodeRegTfbsClusteredV3 HNF4A score:498, expCount:2, expNums:182,432, expScores:498,267, srow:2974527
27327 chr3 193776120 193776419 wgEncodeRegTfbsClusteredV3 RXRA score:139, expCount:1, expNums:194, expScores:139, srow:2974528
27327 chr3 193776123 193776249 wgEncodeRegTfbsClusteredV3 E2F6 score:281, expCount:1, expNums:215, expScores:281, srow:2974529
27327 chr3 193776124 193776447 wgEncodeRegTfbsClusteredV3 EP300 score:148, expCount:1, expNums:190, expScores:148, srow:2974530
27327 chr3 193776129 193776418 wgEncodeRegTfbsClusteredV3 HNF4G score:412, expCount:1, expNums:183, expScores:412, srow:2974531
27327 chr3 193776143 193776402 wgEncodeRegTfbsClusteredV3 FOSL2 score:176, expCount:1, expNums:176, expScores:176, srow:2974532
27327 chr3 193776146 193776405 wgEncodeRegTfbsClusteredV3 TCF12 score:128, expCount:1, expNums:116, expScores:128, srow:2974533
27327 chr3 193776154 193776429 wgEncodeRegTfbsClusteredV3 CEBPD score:125, expCount:1, expNums:173, expScores:125, srow:2974534
27327 chr3 193776218 193776437 wgEncodeRegTfbsClusteredV3 ZBTB7A score:133, expCount:1, expNums:205, expScores:133, srow:2974535
27327 chr3 193776263 193776274 tfbsConsSites V$MYOD_01 score:913, zScore:2.12, srow:3670691
27327 chr3 193776278 193776291 tfbsConsSites V$COUP_01 score:870, zScore:2.18, srow:3670692
27327 chr3 193776107 193776110 phastConsElements100way lod=18 score:280, srow:6336568
27327 chr3 193776148 193776168 phastConsElements100way lod=42 score:363, srow:6336569
27327 chr3 193776182 193776205 phastConsElements100way lod=46 score:373, srow:6336570
  • Page 1 of 2
  • 25 of 31 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27327 cellmeth_recounts PrEC: 0, LNCaP: 29, DU145: 5
27327 cellmeth_diffreps_PrECvsLNCaP A=0, B=22, Length=400, Event=Up, log2FC=Inf, padj=2.04501321634913e-06
27327 cellmeth_diffreps_LNCaPvsDU145 A=22.45, B=1.87, Length=300, Event=Down, log2FC=-3.58, padj=0.000904737890880134
27327 cellexp id=ENSG00000230102, name=RP11-407B7.1, PrEC=2, str=2, LNCaP=12, str=8, DU145=5, str=7
27327 tcgameth site:cg04889072, B=0.16, L=0.52, H=0.52
27327 tcgameth site:cg08478709, B=0.11, L=0.51, H=0.48
27327 tcgameth site:cg08825929, B=0.14, L=0.59, H=0.58
27327 tcgameth site:cg22844232, B=0.24, L=0.6, H=0.58