DMR 27333 chr3:194117401-194118350 (950bp)

DMR Stats
Positionchr3:194117401-194118350 (View on UCSC)
Width950bp
Genomic Context3' end
Nearest GenesGP5 (0bp away)
ANODEV p-value7.63971019763e-05
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27333 GP5 21173 uc003ftv.1 chr3 194115550 194119995 - 950 100.0 1.38 0 0.0 E1 (0), I1 (0), E2 (100) 0.0
27333 GP5 21173 uc021xiz.1 chr3 194117329 194119011 - 950 100.0 0.52 0 0.0 E1 (100) 97.68
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27333 chr3 194116601 194117435 wgEncodeRegDnaseClusteredV2 66 score:839, srow:861379
27333 chr3 194117446 194119275 wgEncodeRegDnaseClusteredV2 81 score:1000, srow:861380
27333 chr3 194117337 194117596 wgEncodeRegTfbsClusteredV3 HNF4A score:199, expCount:1, expNums:182, expScores:199, srow:2976411
27333 chr3 194117355 194117644 wgEncodeRegTfbsClusteredV3 HNF4G score:215, expCount:1, expNums:183, expScores:215, srow:2976412
27333 chr3 194117387 194117606 wgEncodeRegTfbsClusteredV3 ZBTB7A score:140, expCount:1, expNums:205, expScores:140, srow:2976413
27333 chr3 194117743 194118987 wgEncodeRegTfbsClusteredV3 EZH2 score:401, expCount:3, expNums:6,17,43, expScores:401,165,270, srow:2976414
27333 chr3 194117755 194118058 wgEncodeRegTfbsClusteredV3 TCF3 score:146, expCount:1, expNums:117, expScores:146, srow:2976415
27333 chr3 194118317 194118626 wgEncodeRegTfbsClusteredV3 SUZ12 score:108, expCount:1, expNums:358, expScores:108, srow:2976416
27333 chr3 194117604 194117614 tfbsConsSites V$SREBP1_02 score:839, zScore:2.12, srow:3671845
27333 chr3 194117613 194117629 tfbsConsSites V$PPARG_03 score:786, zScore:1.9, srow:3671846
27333 chr3 194117701 194117717 tfbsConsSites V$LUN1_01 score:720, zScore:1.95, srow:3671847
27333 chr3 194117718 194117731 tfbsConsSites V$COUP_01 score:859, zScore:1.97, srow:3671848
27333 chr3 194117742 194117760 tfbsConsSites V$ER_Q6 score:793, zScore:1.95, srow:3671849
27333 chr3 194117787 194117806 tfbsConsSites V$ARNT_02 score:798, zScore:2.07, srow:3671850
27333 chr3 194117787 194117806 tfbsConsSites V$MYCMAX_03 score:776, zScore:1.64, srow:3671851
27333 chr3 194117790 194117803 tfbsConsSites V$MAX_01 score:835, zScore:1.77, srow:3671852
27333 chr3 194117816 194117829 tfbsConsSites V$FAC1_01 score:847, zScore:1.93, srow:3671853
27333 chr3 194117874 194117883 tfbsConsSites V$SP1_01 score:932, zScore:1.79, srow:3671854
27333 chr3 194117894 194117922 tfbsConsSites V$MYOGNF1_01 score:754, zScore:1.99, srow:3671855
27333 chr3 194117901 194117920 tfbsConsSites V$MYCMAX_03 score:810, zScore:2.1, srow:3671856
27333 chr3 194117903 194117917 tfbsConsSites V$E47_01 score:882, zScore:2.06, srow:3671857
27333 chr3 194117905 194117916 tfbsConsSites V$AREB6_03 score:884, zScore:1.82, srow:3671858
27333 chr3 194117905 194117916 tfbsConsSites V$LMO2COM_01 score:961, zScore:2.31, srow:3671859
27333 chr3 194117905 194117916 tfbsConsSites V$MYOD_01 score:907, zScore:2.02, srow:3671860
27333 chr3 194117922 194117949 tfbsConsSites V$PAX5_01 score:764, zScore:1.71, srow:3671861
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  • 25 of 161 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27333 cellmeth_recounts PrEC: 50, LNCaP: 1518, DU145: 38
27333 cellmeth_diffreps_PrECvsLNCaP A=169, B=1842, Length=2560, Event=Up, log2FC=3.45, padj=0
27333 cellmeth_diffreps_PrECvsDU145 A=32, B=3, Length=360, Event=Down, log2FC=-3.42, padj=8.91038547127838e-06
27333 cellmeth_diffreps_LNCaPvsDU145 A=1743.61, B=35.55, Length=1880, Event=Down, log2FC=-5.62, padj=0
27333 cellexp id=ENSG00000178732, name=GP5, PrEC=2, str=5, LNCaP=1, str=0, DU145=3, str=5
27333 tcgameth site:cg03022680, B=0.39, L=0.68, H=0.68
27333 tcgameth site:cg05040232, B=0.43, L=0.6, H=0.6
27333 tcgameth site:cg10398774, B=0.2, L=0.4, H=0.39
27333 tcgameth site:cg15992420, B=0.28, L=0.56, H=0.55
27333 tcgaexp gene=GP5, entrez=2814, pos=chr3:194115550-194119995(-), B=8, L=4, M=4, H=6