DMR 27369 chr4:779151-780650 (1500bp)

DMR Stats
Positionchr4:779151-780650 (View on UCSC)
Width1500bp
Genomic Context3' end
Nearest GenesCPLX1 (0bp away)
ANODEV p-value5.4580288381e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27369 CPLX1 21267 uc003gbi.3 chr4 778745 819945 - 1500 100.0 3.58 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (11), E4 (89.07) 39.6
27369 CPLX1 21267 uc003gbj.3 chr4 778745 819945 - 1500 100.0 3.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (11), E5 (89.07) 39.6
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27369 chr4 779121 779490 wgEncodeRegDnaseClusteredV2 7 score:452, srow:864647
27369 chr4 779681 780015 wgEncodeRegDnaseClusteredV2 4 score:335, srow:864648
27369 chr4 780241 780655 wgEncodeRegDnaseClusteredV2 9 score:343, srow:864649
27369 chr4 778693 779502 wgEncodeRegTfbsClusteredV3 SUZ12 score:130, expCount:1, expNums:578, expScores:130, srow:2989524
27369 chr4 778948 780717 wgEncodeRegTfbsClusteredV3 EZH2 score:589, expCount:8, expNums:6,17,19,21,36,38,40,43, expScores:287,179,100,463,280,384,420,433, srow:2989525
27369 chr4 778959 779478 wgEncodeRegTfbsClusteredV3 SIN3A score:247, expCount:1, expNums:357, expScores:247, srow:2989526
27369 chr4 779028 779357 wgEncodeRegTfbsClusteredV3 MAX score:228, expCount:1, expNums:352, expScores:228, srow:2989527
27369 chr4 779088 779327 wgEncodeRegTfbsClusteredV3 USF1 score:267, expCount:1, expNums:161, expScores:267, srow:2989528
27369 chr4 779154 779477 wgEncodeRegTfbsClusteredV3 SP1 score:155, expCount:1, expNums:153, expScores:155, srow:2989529
27369 chr4 779184 779399 wgEncodeRegTfbsClusteredV3 POU5F1 score:238, expCount:1, expNums:148, expScores:238, srow:2989530
27369 chr4 779223 779482 wgEncodeRegTfbsClusteredV3 TCF12 score:189, expCount:1, expNums:159, expScores:189, srow:2989531
27369 chr4 779230 779553 wgEncodeRegTfbsClusteredV3 BACH1 score:365, expCount:1, expNums:341, expScores:365, srow:2989532
27369 chr4 779283 779538 wgEncodeRegTfbsClusteredV3 HDAC2 score:172, expCount:1, expNums:141, expScores:172, srow:2989533
27369 chr4 779291 779354 wgEncodeRegTfbsClusteredV3 NANOG score:371, expCount:1, expNums:143, expScores:371, srow:2989534
27369 chr4 779136 779153 tfbsConsSites V$SRF_01 score:775, zScore:2.6, srow:3678217
27369 chr4 779150 779162 tfbsConsSites V$RORA1_01 score:918, zScore:2.53, srow:3678219
27369 chr4 779157 779173 tfbsConsSites V$HNF1_C score:813, zScore:2.05, srow:3678220
27369 chr4 779248 779258 tfbsConsSites V$EVI1_02 score:874, zScore:2.24, srow:3678221
27369 chr4 779253 779263 tfbsConsSites V$GATA_C score:883, zScore:1.65, srow:3678222
27369 chr4 779278 779298 tfbsConsSites V$STAT3_01 score:749, zScore:1.68, srow:3678223
27369 chr4 779281 779293 tfbsConsSites V$AREB6_01 score:908, zScore:2.14, srow:3678224
27369 chr4 779292 779303 tfbsConsSites V$CDC5_01 score:853, zScore:2.35, srow:3678225
27369 chr4 779296 779309 tfbsConsSites V$FOXJ2_02 score:882, zScore:2.44, srow:3678226
27369 chr4 779300 779322 tfbsConsSites V$OCT1_04 score:864, zScore:3.1, srow:3678227
27369 chr4 779650 779664 tfbsConsSites V$CDPCR3_01 score:799, zScore:1.93, srow:3678228
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  • 25 of 87 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27369 cellmeth_recounts PrEC: 45, LNCaP: 683, DU145: 63
27369 cellmeth_diffreps_PrECvsLNCaP A=416, B=236, Length=480, Event=Down, log2FC=-0.82, padj=1.20641227423423e-10
27369 cellmeth_diffreps_PrECvsLNCaP A=39, B=508, Length=1400, Event=Up, log2FC=3.7, padj=0
27369 cellmeth_diffreps_PrECvsDU145 A=425, B=42, Length=640, Event=Down, log2FC=-3.34, padj=0
27369 cellmeth_diffreps_PrECvsDU145 A=39, B=12, Length=300, Event=Down, log2FC=-1.7, padj=0.00347164018654923
27369 cellmeth_diffreps_LNCaPvsDU145 A=850.96, B=77.64, Length=2300, Event=Down, log2FC=-3.45, padj=0
27369 cellexp id=ENSG00000168993, name=CPLX1, PrEC=13, str=12, LNCaP=1166, str=347, DU145=233, str=177
27369 tcgameth site:cg05448404, B=0.55, L=0.71, H=0.7
27369 tcgameth site:cg17128947, B=0.5, L=0.77, H=0.78
27369 tcgameth site:cg17397631, B=0.15, L=0.66, H=0.61
27369 tcgameth site:cg27651229, B=0.21, L=0.55, H=0.51
27369 tcgaexp gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8
27369 tcgaexp gene=CPLX1, entrez=10815, pos=chr4:778745-819945(-), B=122, L=209, M=225, H=262
27369 tcgaexp gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1
27369 tcgaexp gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458
27369 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0