DMR 274 chr1:52430301-52430450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:52430301-52430450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | RAB3B (0bp away) |
| ANODEV p-value | 0.00244782190111 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 274 | RAB3B | 876 | uc001cth.3 | chr1 | 52373628 | 52456436 | - | 150 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 274 | chr1 | 52429941 | 52430490 | wgEncodeRegTfbsClusteredV3 | GATA2 | score:200, expCount:1, expNums:591, expScores:200, srow:141357 |
| 274 | chr1 | 52430104 | 52430419 | wgEncodeRegTfbsClusteredV3 | EP300 | score:238, expCount:1, expNums:519, expScores:238, srow:141358 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 274 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 0 |  |
| 274 | cellexp | id=ENSG00000169213, name=RAB3B, PrEC=2230, str=682, LNCaP=3014, str=5397, DU145=25570, str=19546 |  |
| 274 | tcgaexp | gene=RAB3B, entrez=5865, pos=chr1:52373628-52456436(-), B=770, L=1699, M=1714, H=1274 |  |
| 274 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |