DMR 27481 chr4:8112401-8112650 (250bp)
| DMR Stats | |
|---|---|
| Position | chr4:8112401-8112650 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | ABLIM2 (0bp away) |
| ANODEV p-value | 0.00734708005254 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27481 | ABLIM2 | 21371 | uc003gkj.4 | chr4 | 7967037 | 8160559 | - | 250 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc003gkm.4 | chr4 | 7967037 | 8160559 | - | 250 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc003gko.3 | chr4 | 7967037 | 8160559 | - | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc003gkp.3 | chr4 | 7967037 | 8160559 | - | 250 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc003gkq.3 | chr4 | 7967037 | 8160559 | - | 250 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc003gkr.3 | chr4 | 7967037 | 8160559 | - | 250 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc003gks.3 | chr4 | 8008748 | 8160559 | - | 250 | 100.0 | 1.22 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 27481 | ABLIM2 | 21371 | uc011bwl.1 | chr4 | 8031383 | 8129389 | - | 250 | 100.0 | 1.32 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 8 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27481 | chr4 | 8111826 | 8112695 | wgEncodeRegDnaseClusteredV2 | 56 | score:1000, srow:871447 |
| 27481 | chr4 | 8111872 | 8112551 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:358, expCount:2, expNums:147,256, expScores:329,358, srow:3005610 |
| 27481 | chr4 | 8111985 | 8112474 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:150, expCount:1, expNums:157, expScores:150, srow:3005611 |
| 27481 | chr4 | 8112073 | 8112658 | wgEncodeRegTfbsClusteredV3 | YY1 | score:218, expCount:1, expNums:162, expScores:212, srow:3005612 |
| 27481 | chr4 | 8112106 | 8112425 | wgEncodeRegTfbsClusteredV3 | JUND | score:713, expCount:2, expNums:142,350, expScores:526,713, srow:3005613 |
| 27481 | chr4 | 8112108 | 8112437 | wgEncodeRegTfbsClusteredV3 | MAX | score:297, expCount:1, expNums:352, expScores:297, srow:3005614 |
| 27481 | chr4 | 8112118 | 8112501 | wgEncodeRegTfbsClusteredV3 | RFX5 | score:404, expCount:2, expNums:356,449, expScores:404,230, srow:3005617 |
| 27481 | chr4 | 8112140 | 8112402 | wgEncodeRegTfbsClusteredV3 | FOS | score:272, expCount:2, expNums:557,558, expScores:207,272, srow:3005618 |
| 27481 | chr4 | 8112142 | 8112477 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:209, expCount:4, expNums:566,567,568,569, expScores:209,138,136,156, srow:3005619 |
| 27481 | chr4 | 8112173 | 8112432 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:260, expCount:1, expNums:159, expScores:260, srow:3005621 |
| 27481 | chr4 | 8112225 | 8112440 | wgEncodeRegTfbsClusteredV3 | POU5F1 | score:148, expCount:1, expNums:148, expScores:148, srow:3005623 |
| 27481 | chr4 | 8112233 | 8112412 | wgEncodeRegTfbsClusteredV3 | BCL11A | score:92, expCount:1, expNums:136, expScores:92, srow:3005624 |
| 27481 | chr4 | 8112329 | 8112691 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:263, expCount:2, expNums:345,479, expScores:220,263, srow:3005626 |
| 27481 | chr4 | 8112337 | 8112773 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:56, expNums:2,5,16,20,24,39,44,137,174,213,290,463,493,597,601,603,604,605,606,607,609,621,635,636,639,640,641,644,646,648,650,651,652,653,654,655,656,657,659,660,661,662,669,672,673,675,676,677,678,679,681,683,685,686,688,689, expScores:95,707,117,103,310,121,180,1000,266,1000,293,103,923,372,333,679,356,636,264,326,633,620,421,235,152,180,105,126,116,309,162,316,162,161,296,96,147,185,266,116,139,273,222,170,217,116,244,235,130,368,135,142,107,227,403,103, srow:3005627 |
| 27481 | chr4 | 8112344 | 8112619 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:152, expCount:1, expNums:138, expScores:152, srow:3005628 |
| 27481 | chr4 | 8112374 | 8112617 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:3, expNums:149,231,355, expScores:1000,189,466, srow:3005629 |
| 27481 | chr4 | 8112512 | 8112525 | phastConsElements100way | lod=32 | score:337, srow:6372290 |
| 27481 | chr4 | 8112534 | 8112541 | phastConsElements100way | lod=13 | score:247, srow:6372291 |
- 18 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27481 | cellmeth_recounts | PrEC: 21, LNCaP: 3, DU145: 6 |  |
| 27481 | cellmeth_diffreps_PrECvsLNCaP | A=32, B=2, Length=380, Event=Down, log2FC=-4, padj=1.03097752076441e-06 |  |
| 27481 | cellmeth_diffreps_PrECvsDU145 | A=33, B=5, Length=380, Event=Down, log2FC=-2.72, padj=9.38336128103152e-05 |  |
| 27481 | cellexp | id=ENSG00000163995, name=ABLIM2, PrEC=16, str=20, LNCaP=24, str=12, DU145=95, str=32 |  |
| 27481 | tcgaexp | gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8 |  |
| 27481 | tcgaexp | gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1 |  |
| 27481 | tcgaexp | gene=ABLIM2, entrez=84448, pos=chr4:7967037-8160559(-), B=115, L=144, M=158, H=175 |  |
| 27481 | tcgaexp | gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458 |  |
| 27481 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |