DMR 27558 chr4:42121951-42122150 (200bp)
| DMR Stats | |
|---|---|
| Position | chr4:42121951-42122150 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | BEND4 (0bp away) |
| ANODEV p-value | 0.000644697382462 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27558 | BEND4 | 21552 | uc003gwm.3 | chr4 | 42112870 | 42154895 | - | 200 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (4.5), I5 (95.5), E6 (0) | 0.0 |
| 27558 | BEND4 | 21552 | uc003gwn.3 | chr4 | 42112870 | 42154895 | - | 200 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (40), I5 (60), E6 (0) | 0.0 |
| 27558 | BEND4 | 21552 | uc011byy.1 | chr4 | 42121975 | 42154393 | - | 176 | 88.0 | 0.54 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (88) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27558 | chr4 | 42122001 | 42122235 | wgEncodeRegDnaseClusteredV2 | 5 | score:162, srow:882825 |
| 27558 | chr4 | 42122079 | 42122100 | tfbsConsSites | V$MEF2_04 | score:770, zScore:2.43, srow:3754800 |
| 27558 | chr4 | 42122104 | 42122124 | tfbsConsSites | V$STAT1_01 | score:789, zScore:2.21, srow:3754801 |
| 27558 | chr4 | 42122115 | 42122124 | tfbsConsSites | V$P53_02 | score:939, zScore:1.65, srow:3754802 |
| 27558 | chr4 | 42122117 | 42122135 | tfbsConsSites | V$PAX2_01 | score:772, zScore:1.74, srow:3754803 |
| 27558 | chr4 | 42122117 | 42122137 | tfbsConsSites | V$PAX6_01 | score:774, zScore:2.06, srow:3754804 |
| 27558 | chr4 | 42122139 | 42122156 | tfbsConsSites | V$IRF7_01 | score:838, zScore:2.46, srow:3754805 |
| 27558 | chr4 | 42122141 | 42122153 | tfbsConsSites | V$IRF2_01 | score:813, zScore:1.89, srow:3754806 |
| 27558 | chr4 | 42122141 | 42122155 | tfbsConsSites | V$ISRE_01 | score:786, zScore:1.77, srow:3754807 |
| 27558 | chr4 | 42122147 | 42122160 | tfbsConsSites | V$CEBPB_01 | score:882, zScore:1.67, srow:3754808 |
| 27558 | chr4 | 42122095 | 42122095 | cosmic | COSM1055463 | srow:888661 |
| 27558 | chr4 | 42122107 | 42122107 | cosmic | COSM218806 | srow:888662 |
| 27558 | chr4 | 42121957 | 42121962 | phastConsElements100way | lod=19 | score:285, srow:6467706 |
| 27558 | chr4 | 42121970 | 42121972 | phastConsElements100way | lod=15 | score:262, srow:6467707 |
| 27558 | chr4 | 42121976 | 42122044 | phastConsElements100way | lod=387 | score:583, srow:6467708 |
| 27558 | chr4 | 42122046 | 42122209 | phastConsElements100way | lod=2118 | score:752, srow:6467709 |
- 16 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27558 | cellmeth_recounts | PrEC: 2, LNCaP: 10, DU145: 5 |  |
| 27558 | cellexp | id=ENSG00000188848, name=BEND4, PrEC=1, str=0, LNCaP=780, str=517, DU145=365, str=162 |  |
| 27558 | tcgameth | site:cg22097249, B=0.66, L=0.78, H=0.77 |  |
| 27558 | tcgameth | site:cg27661315, B=0.66, L=0.8, H=0.76 |  |
| 27558 | tcgaexp | gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8 |  |
| 27558 | tcgaexp | gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1 |  |
| 27558 | tcgaexp | gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458 |  |
| 27558 | tcgaexp | gene=BEND4, entrez=389206, pos=chr4:42112870-42154895(-), B=950, L=3453, M=3518, H=3611 |  |
| 27558 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |