DMR 27569 chr4:53727651-53727950 (300bp)

DMR Stats
Positionchr4:53727651-53727950 (View on UCSC)
Width300bp
Genomic Contextpromoter
Nearest GenesRASL11B (544bp away)
ANODEV p-value2.32547038175e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27569 chr4 53727246 53727710 wgEncodeRegDnaseClusteredV2 12 score:308, srow:884762
27569 chr4 53727721 53728235 wgEncodeRegDnaseClusteredV2 34 score:592, srow:884763
27569 chr4 53727226 53727745 wgEncodeRegTfbsClusteredV3 SIN3A score:230, expCount:1, expNums:357, expScores:230, srow:3043139
27569 chr4 53727908 53728764 wgEncodeRegTfbsClusteredV3 E2F1 score:790, expCount:1, expNums:572, expScores:432, srow:3043140
27569 chr4 53727929 53728224 wgEncodeRegTfbsClusteredV3 GATA3 score:188, expCount:1, expNums:272, expScores:188, srow:3043141
27569 chr4 53727946 53728255 wgEncodeRegTfbsClusteredV3 MYC score:186, expCount:1, expNums:626, expScores:186, srow:3043142
27569 chr4 53726038 53728037 cpgShore — values(x.gr)[overs$srow, ]:35811
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27569 cellmeth_recounts PrEC: 11, LNCaP: 10, DU145: 4
27569 tcgameth site:cg00791764, B=0.65, L=0.71, H=0.68
27569 tcgameth site:cg03786743, B=0.56, L=0.53, H=0.49
27569 tcgameth site:cg21521518, B=0.43, L=0.55, H=0.55
27569 tcgaexp gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8
27569 tcgaexp gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1
27569 tcgaexp gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458
27569 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0