DMR 27623 chr4:84457951-84458200 (250bp)
| DMR Stats | |
|---|---|
| Position | chr4:84457951-84458200 (View on UCSC) |
| Width | 250bp |
| Genomic Context | promoter |
| Nearest Genes | AGPAT9 (0bp away) |
| ANODEV p-value | 7.23496883486e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27623 | AGPAT9 | 21814 | uc003how.4 | chr4 | 84457260 | 84527027 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 27623 | AGPAT9 | 21814 | uc003hox.4 | chr4 | 84457470 | 84527027 | + | 250 | 100.0 | 0.05 | 0 | 7.6 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 27623 | AGPAT9 | 21814 | uc003hoy.4 | chr4 | 84457067 | 84527027 | + | 250 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27623 | chr4 | 84457546 | 84458015 | wgEncodeRegDnaseClusteredV2 | 20 | score:619, srow:893054 |
| 27623 | chr4 | 84458021 | 84458555 | wgEncodeRegDnaseClusteredV2 | 10 | score:166, srow:893055 |
| 27623 | chr4 | 84457861 | 84459860 | cpgShore | — | values(x.gr)[overs$srow, ]:36061 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27623 | cellmeth_recounts | PrEC: 1, LNCaP: 24, DU145: 0 |  |
| 27623 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=15, Length=280, Event=Up, log2FC=Inf, padj=0.000225236251108575 |  |
| 27623 | cellmeth_diffreps_LNCaPvsDU145 | A=20.31, B=0, Length=380, Event=Down, log2FC=-Inf, padj=2.64732986297272e-05 |  |
| 27623 | cellexp | id=ENSG00000138678, name=AGPAT9, PrEC=234, str=50, LNCaP=53, str=35, DU145=1779, str=2357 |  |
| 27623 | tcgameth | site:cg00230700, B=0.06, L=0.25, H=0.3 |  |
| 27623 | tcgaexp | gene=AGPAT9, entrez=84803, pos=chr4:84457067-84527027(+), B=166, L=81, M=115, H=169 |  |
| 27623 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |