DMR 27684 chr4:121993901-121994400 (500bp)
| DMR Stats | |
|---|---|
| Position | chr4:121993901-121994400 (View on UCSC) |
| Width | 500bp |
| Genomic Context | promoter |
| Nearest Genes | NDNF (227bp away) |
| ANODEV p-value | 4.22021676649e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27684 | chr4 | 121993166 | 121994030 | wgEncodeRegDnaseClusteredV2 | 89 | score:606, srow:903272 |
| 27684 | chr4 | 121994081 | 121994535 | wgEncodeRegDnaseClusteredV2 | 13 | score:285, srow:903273 |
| 27684 | chr4 | 121993614 | 121994283 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:267, expCount:1, expNums:8, expScores:267, srow:3104353 |
| 27684 | chr4 | 121993926 | 121994525 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:639, expCount:4, expNums:3,15,17,40, expScores:167,639,171,529, srow:3104354 |
| 27684 | chr4 | 121994118 | 121994129 | tfbsConsSites | V$NMYC_01 | score:891, zScore:1.91, srow:3875091 |
| 27684 | chr4 | 121994154 | 121994167 | tfbsConsSites | V$SOX9_B1 | score:893, zScore:2.32, srow:3875092 |
| 27684 | chr4 | 121994374 | 121994383 | tfbsConsSites | V$SOX5_01 | score:956, zScore:2.22, srow:3875093 |
| 27684 | chr4 | 121994315 | 121994319 | phastConsElements100way | lod=14 | score:255, srow:6687411 |
| 27684 | chr4 | 121994357 | 121994385 | phastConsElements100way | lod=85 | score:433, srow:6687412 |
| 27684 | chr4 | 121994392 | 121994396 | phastConsElements100way | lod=15 | score:262, srow:6687413 |
| 27684 | chr4 | 121994400 | 121994410 | phastConsElements100way | lod=25 | score:312, srow:6687414 |
| 27684 | chr4 | 121993704 | 121995703 | cpgShore | — | values(x.gr)[overs$srow, ]:36290 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27684 | cellmeth_recounts | PrEC: 5, LNCaP: 28, DU145: 6 |  |
| 27684 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00296620769710024 |  |
| 27684 | cellexp | id=ENSG00000173376, name=NDNF, PrEC=0, str=7, LNCaP=0, str=0, DU145=23, str=17 |  |
| 27684 | cellexp | id=ENSG00000250344, name=RP11-647P12.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=0 |  |
| 27684 | tcgameth | site:cg07492240, B=0.18, L=0.51, H=0.49 |  |
| 27684 | tcgameth | site:cg16546016, B=0.05, L=0.32, H=0.32 |  |
| 27684 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |