DMR 27778 chr4:184018751-184019450 (700bp)

DMR Stats
Positionchr4:184018751-184019450 (View on UCSC)
Width700bp
Genomic Context3' end
Nearest GenesWWC2-AS2 (0bp away)
ANODEV p-value2.94621275726e-05
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27778 WWC2-AS2 22292 uc003ivj.1 chr4 184018174 184020352 - 700 100.0 0.65 0 0.0 E1 (100) 60.43
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27778 chr4 184018306 184020515 wgEncodeRegDnaseClusteredV2 123 score:1000, srow:920799
27778 chr4 184018397 184019012 wgEncodeRegTfbsClusteredV3 CHD1 score:213, expCount:1, expNums:4, expScores:213, srow:3155655
27778 chr4 184018419 184018908 wgEncodeRegTfbsClusteredV3 TAF1 score:143, expCount:1, expNums:157, expScores:143, srow:3155656
27778 chr4 184018985 184019528 wgEncodeRegTfbsClusteredV3 NFIC score:270, expCount:1, expNums:187, expScores:270, srow:3155657
27778 chr4 184019107 184021353 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:38, expNums:61,62,78,146,147,163,168,191,192,206,207,228,229,259,275,362,366,402,445,446,461,465,520,522,523,525,563,564,577,583,596,599,610,613,616,619,632,637, expScores:350,315,601,463,1000,923,408,325,279,174,384,196,701,301,311,109,190,380,168,268,125,371,189,256,356,475,484,195,153,360,223,129,281,206,267,150,352,146, srow:3155658
27778 chr4 184019144 184019872 wgEncodeRegTfbsClusteredV3 TAF1 score:144, expCount:2, expNums:65,169, expScores:142,144, srow:3155659
27778 chr4 184019162 184019537 wgEncodeRegTfbsClusteredV3 YY1 score:208, expCount:1, expNums:203, expScores:208, srow:3155660
27778 chr4 184019170 184019625 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:137, expCount:1, expNums:195, expScores:137, srow:3155661
27778 chr4 184019191 184019470 wgEncodeRegTfbsClusteredV3 FOXA1 score:170, expCount:1, expNums:178, expScores:170, srow:3155662
27778 chr4 184019431 184020464 wgEncodeRegTfbsClusteredV3 SMARCB1 score:228, expCount:1, expNums:391, expScores:224, srow:3155663
27778 chr4 184019438 184019817 wgEncodeRegTfbsClusteredV3 E2F1 score:182, expCount:1, expNums:390, expScores:182, srow:3155664
27778 chr4 184019081 184019104 tfbsConsSites V$BRACH_01 score:729, zScore:2.71, srow:3981393
27778 chr4 184019310 184019325 tfbsConsSites V$ELK1_01 score:867, zScore:2.17, srow:3981394
27778 chr4 184019313 184019322 tfbsConsSites V$CETS1P54_01 score:963, zScore:2.09, srow:3981395
27778 chr4 184019359 184019374 tfbsConsSites V$FREAC3_01 score:809, zScore:1.85, srow:3981396
27778 chr4 184019359 184019374 tfbsConsSites V$FREAC7_01 score:848, zScore:1.67, srow:3981397
27778 chr4 184019361 184019373 tfbsConsSites V$HFH3_01 score:899, zScore:1.78, srow:3981398
27778 chr4 184019362 184019373 tfbsConsSites V$FOXD3_01 score:898, zScore:1.92, srow:3981399
27778 chr4 184019364 184019377 tfbsConsSites V$POU3F2_01 score:841, zScore:2.55, srow:3981400
27778 chr4 184019139 184019152 phastConsElements100way lod=22 score:300, srow:6864796
27778 chr4 184019248 184019250 phastConsElements100way lod=16 score:268, srow:6864797
27778 chr4 184019364 184019368 phastConsElements100way lod=13 score:247, srow:6864798
27778 chr4 184018831 184021379 cpgIsland CpG: 245 length:2549, cpgNum:245, gcNum:1667, perCpg:19.2, perGc:65.4, obsExp:0.9, srow:20290
27778 chr4 184016831 184018830 cpgShore — values(x.gr)[overs$srow, ]:36688
  • 24 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27778 cellmeth_recounts PrEC: 89, LNCaP: 661, DU145: 4
27778 cellmeth_diffreps_PrECvsLNCaP A=149, B=625, Length=1500, Event=Up, log2FC=2.07, padj=0
27778 cellmeth_diffreps_PrECvsDU145 A=149, B=4, Length=840, Event=Down, log2FC=-5.22, padj=0
27778 cellmeth_diffreps_LNCaPvsDU145 A=668.15, B=4.68, Length=1500, Event=Down, log2FC=-7.16, padj=0
27778 cellexp id=ENSG00000251359, name=WWC2-AS2, PrEC=23, str=25, LNCaP=2, str=0, DU145=26, str=15
27778 tcgameth site:cg04939673, B=0.41, L=0.59, H=0.59
27778 tcgaexp gene=WWC2-AS2, entrez=152641, pos=chr4:184018174-184020352(-), B=52, L=29, M=26, H=23
27778 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0