DMR 27806 chr5:191801-192100 (300bp)

DMR Stats
Positionchr5:191801-192100 (View on UCSC)
Width300bp
Genomic Contextpromoter
Nearest GenesLRRC14B (0bp away)
ANODEV p-value0.0196877245836
FrequenciesBenign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27806 LRRC14B 22371 uc003jal.1 chr5 191626 195468 + 300 100.0 0.2 0 100.0 E1 (100), I1 (0), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27806 chr5 191026 192075 wgEncodeRegDnaseClusteredV2 46 score:774, srow:924678
27806 chr5 192086 192630 wgEncodeRegDnaseClusteredV2 6 score:277, srow:924679
27806 chr5 191266 192219 wgEncodeRegTfbsClusteredV3 EZH2 score:324, expCount:2, expNums:15,40, expScores:255,213, srow:3166086
27806 chr5 191536 191913 wgEncodeRegTfbsClusteredV3 POLR2A score:392, expCount:1, expNums:105, expScores:392, srow:3166092
27806 chr5 191683 192118 wgEncodeRegTfbsClusteredV3 MAX score:238, expCount:1, expNums:296, expScores:238, srow:3166093
27806 chr5 191762 192072 wgEncodeRegTfbsClusteredV3 PAX5 score:203, expCount:2, expNums:100,129, expScores:177,203, srow:3166094
27806 chr5 191829 192012 wgEncodeRegTfbsClusteredV3 CTCF score:130, expCount:1, expNums:603, expScores:130, srow:3166095
27806 chr5 191863 192166 wgEncodeRegTfbsClusteredV3 TCF3 score:142, expCount:1, expNums:117, expScores:142, srow:3166096
27806 chr5 191865 192124 wgEncodeRegTfbsClusteredV3 TCF12 score:134, expCount:1, expNums:116, expScores:134, srow:3166097
27806 chr5 191899 192033 wgEncodeRegTfbsClusteredV3 USF1 score:467, expCount:1, expNums:118, expScores:467, srow:3166098
27806 chr5 191788 191806 tfbsConsSites V$ER_Q6 score:784, zScore:1.8, srow:3994006
27806 chr5 191814 191829 tfbsConsSites V$ARP1_01 score:792, zScore:1.73, srow:3994007
27806 chr5 191870 191878 tfbsConsSites V$ZIC1_01 score:960, zScore:2.52, srow:3994008
27806 chr5 191870 191878 tfbsConsSites V$ZIC2_01 score:947, zScore:2.68, srow:3994009
27806 chr5 191870 191878 tfbsConsSites V$ZIC3_01 score:973, zScore:2.7, srow:3994010
27806 chr5 191904 191913 tfbsConsSites V$P53_02 score:954, zScore:1.93, srow:3994011
27806 chr5 191938 191951 tfbsConsSites V$MYCMAX_01 score:841, zScore:2.37, srow:3994012
27806 chr5 191938 191951 tfbsConsSites V$USF_02 score:905, zScore:1.72, srow:3994013
27806 chr5 191990 192008 tfbsConsSites V$PAX2_01 score:771, zScore:1.72, srow:3994014
27806 chr5 192003 192018 tfbsConsSites V$E47_02 score:892, zScore:1.96, srow:3994015
27806 chr5 192005 192016 tfbsConsSites V$LMO2COM_01 score:928, zScore:1.83, srow:3994016
27806 chr5 192005 192016 tfbsConsSites V$AREB6_03 score:947, zScore:2.82, srow:3994017
27806 chr5 192042 192054 tfbsConsSites V$MAZR_01 score:855, zScore:1.66, srow:3994018
27806 chr5 192049 192069 tfbsConsSites V$NRSF_01 score:716, zScore:1.81, srow:3994019
27806 chr5 192057 192074 tfbsConsSites V$NF1_Q6 score:868, zScore:1.66, srow:3994020
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Omics Overlaps

Dmrid Omic Set Data Plot
27806 cellmeth_recounts PrEC: 31, LNCaP: 127, DU145: 10
27806 cellmeth_diffreps_PrECvsLNCaP A=25, B=92, Length=500, Event=Up, log2FC=1.88, padj=1.31935260817714e-08
27806 cellmeth_diffreps_PrECvsDU145 A=198, B=14, Length=780, Event=Down, log2FC=-3.82, padj=0
27806 cellmeth_diffreps_LNCaPvsDU145 A=208.46, B=16.84, Length=1100, Event=Down, log2FC=-3.63, padj=0
27806 cellexp id=ENSG00000185028, name=LRRC14B, PrEC=0, str=0, LNCaP=2, str=3, DU145=2, str=4
27806 tcgameth site:cg19858576, B=0.18, L=0.5, H=0.47
27806 tcgaexp gene=LRRC14B, entrez=389257, pos=chr5:191626-195468(+), B=9, L=1, M=3, H=3