DMR 27817 chr5:522101-522250 (150bp)
| DMR Stats | |
|---|---|
| Position | chr5:522101-522250 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | SLC9A3 (0bp away) |
| ANODEV p-value | 0.0020389005623 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27817 | SLC9A3 | 22380 | uc003jbe.2 | chr5 | 473334 | 524549 | - | 150 | 100.0 | 0.51 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 27817 | SLC9A3 | 22380 | uc011clx.1 | chr5 | 473334 | 524549 | - | 150 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27817 | chr5 | 521846 | 522115 | wgEncodeRegDnaseClusteredV2 | 3 | score:257, srow:925013 |
| 27817 | chr5 | 522206 | 522535 | wgEncodeRegDnaseClusteredV2 | 7 | score:447, srow:925014 |
| 27817 | chr5 | 521677 | 523676 | cpgShore | — | values(x.gr)[overs$srow, ]:36898 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27817 | cellmeth_recounts | PrEC: 4, LNCaP: 82, DU145: 4 |  |
| 27817 | cellmeth_diffreps_PrECvsLNCaP | A=6, B=93, Length=580, Event=Up, log2FC=3.95, padj=0 |  |
| 27817 | cellmeth_diffreps_LNCaPvsDU145 | A=99.42, B=2.81, Length=560, Event=Down, log2FC=-5.15, padj=0 |  |
| 27817 | cellexp | id=ENSG00000066230, name=SLC9A3, PrEC=47, str=87, LNCaP=135, str=33, DU145=65, str=27 |  |
| 27817 | tcgaexp | gene=SLC9A3, entrez=6550, pos=chr5:473334-524549(-), B=42, L=19, M=70, H=94 |  |