DMR 27823 chr5:913251-913450 (200bp)
| DMR Stats | |
|---|---|
| Position | chr5:913251-913450 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | TRIP13 (0bp away) |
| ANODEV p-value | 0.000578921313482 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27823 | TRIP13 | 22388 | uc003jbr.3 | chr5 | 892969 | 918164 | + | 200 | 100.0 | 0.77 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27823 | chr5 | 912467 | 913332 | wgEncodeRegTfbsClusteredV3 | SMARCC1 | score:1000, expCount:1, expNums:371, expScores:353, srow:3167933 |
| 27823 | chr5 | 912658 | 913313 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:260, expCount:1, expNums:63, expScores:260, srow:3167956 |
| 27823 | chr5 | 912836 | 913468 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:65, expNums:0,9,14,16,18,20,35,37,39,44,49,174,262,290,463,595,597,598,601,603,604,605,606,607,612,618,627,628,629,630,631,635,638,639,640,641,643,644,645,648,652,653,657,658,659,660,661,662,663,664,665,666,669,671,672,673,674,675,676,680,681,683,685,686,688, expScores:344,233,226,172,126,132,262,133,891,837,197,114,126,366,261,1000,229,988,198,304,368,312,340,214,1000,165,1000,1000,1000,953,1000,1000,337,147,121,195,170,109,199,124,207,196,387,222,669,183,354,316,354,794,277,626,149,704,276,372,298,180,706,498,151,333,214,449,208, srow:3167963 |
| 27823 | chr5 | 912846 | 913355 | wgEncodeRegTfbsClusteredV3 | SMARCC2 | score:204, expCount:1, expNums:372, expScores:204, srow:3167964 |
| 27823 | chr5 | 912862 | 914861 | cpgShore | — | values(x.gr)[overs$srow, ]:36941 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27823 | cellmeth_recounts | PrEC: 8, LNCaP: 3, DU145: 3 |  |
| 27823 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=4, Length=360, Event=Down, log2FC=-2.7, padj=0.000827318446465587 |  |
| 27823 | cellexp | id=ENSG00000071539, name=TRIP13, PrEC=5347, str=411, LNCaP=1857, str=3911, DU145=7634, str=14530 |  |
| 27823 | tcgaexp | gene=TRIP13, entrez=9319, pos=chr5:892969-918164(+), B=97, L=139, M=163, H=290 |  |