DMR 27826 chr5:1021651-1021900 (250bp)

DMR Stats
Positionchr5:1021651-1021900 (View on UCSC)
Width250bp
Genomic Contextintron
Nearest GenesNKD2 (0bp away)
ANODEV p-value0.000827015799273
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27826 NKD2 22390 uc003jbt.2 chr5 1009077 1038927 + 250 100.0 2.83 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
27826 NKD2 22390 uc010itf.2 chr5 1009077 1038927 + 250 100.0 0.36 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27826 chr5 1021506 1021935 wgEncodeRegDnaseClusteredV2 18 score:589, srow:925487
27826 chr5 1021501 1022016 wgEncodeRegTfbsClusteredV3 TCF7L2 score:210, expCount:1, expNums:367, expScores:210, srow:3168298
27826 chr5 1021673 1021684 tfbsConsSites V$MYOD_01 score:919, zScore:2.21, srow:3994941
27826 chr5 1021673 1021684 tfbsConsSites V$AREB6_03 score:881, zScore:1.77, srow:3994942
27826 chr5 1021805 1021819 tfbsConsSites V$TST1_01 score:873, zScore:2.62, srow:3994943
27826 chr5 1021822 1021833 tfbsConsSites V$E2F_03 score:871, zScore:2.06, srow:3994944
27826 chr5 1021660 1021666 phastConsElements100way lod=21 score:295, srow:6891977
27826 chr5 1021671 1021682 phastConsElements100way lod=16 score:268, srow:6891978
27826 chr5 1021712 1021733 phastConsElements100way lod=61 score:400, srow:6891979
27826 chr5 1021753 1021762 phastConsElements100way lod=22 score:300, srow:6891980
27826 chr5 1021776 1021784 phastConsElements100way lod=30 score:330, srow:6891981
27826 chr5 1021799 1021805 phastConsElements100way lod=17 score:274, srow:6891982
27826 chr5 1021814 1021816 phastConsElements100way lod=13 score:247, srow:6891983
27826 chr5 1021331 1023330 cpgShelf — values(x.gr)[overs$srow, ]:31057
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27826 cellmeth_recounts PrEC: 5, LNCaP: 5, DU145: 10
27826 cellexp id=ENSG00000145506, name=NKD2, PrEC=3, str=16, LNCaP=365, str=78, DU145=689, str=375
27826 tcgaexp gene=NKD2, entrez=85409, pos=chr5:1009077-1038927(+), B=153, L=147, M=104, H=99