DMR 27830 chr5:1255451-1255650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr5:1255451-1255650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | TERT (0bp away) |
| ANODEV p-value | 5.90353226236e-05 |
| Frequencies | Benign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27830 | TERT | 22396 | uc003jbz.1 | chr5 | 1253287 | 1283125 | - | 200 | 100.0 | 2.6 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (62.5), E10 (38), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 27830 | TERT | 22396 | uc003jca.1 | chr5 | 1253287 | 1295162 | - | 200 | 100.0 | 5.22 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (62.5), E14 (38), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 27830 | TERT | 22396 | uc003jcb.1 | chr5 | 1253287 | 1295162 | - | 200 | 100.0 | 2.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (62.5), E14 (38), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 27830 | TERT | 22396 | uc003jcc.1 | chr5 | 1253287 | 1295162 | - | 200 | 100.0 | 2.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (62.5), E13 (38), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 27830 | TERT | 22396 | uc003jcd.1 | chr5 | 1253287 | 1295162 | - | 200 | 100.0 | 1.62 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (62.5), E11 (38), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 27830 | TERT | 22396 | uc003jce.1 | chr5 | 1253287 | 1295162 | - | 200 | 100.0 | 1.62 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (62.5), E11 (38), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 27830 | TERT | 22396 | uc021xvz.1 | chr5 | 1255402 | 1282739 | - | 200 | 100.0 | 1.49 | 1 | 0.0 | E1 (0), I1 (62.5), E2 (38) | 100.0 |
| 27830 | TERT | 22396 | uc021xwa.1 | chr5 | 1255402 | 1295162 | - | 200 | 100.0 | 5.46 | 0 | 0.0 | E1 (0), I1 (62.5), E2 (38) | 100.0 |
| 27830 | TERT | 22396 | uc021xwb.1 | chr5 | 1255402 | 1295162 | - | 200 | 100.0 | 12.56 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (62.5), E7 (38) | 100.0 |
- 9 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27830 | chr5 | 1255421 | 1255595 | wgEncodeRegDnaseClusteredV2 | 4 | score:713, srow:925778 |
| 27830 | chr5 | 1255540 | 1256015 | wgEncodeRegTfbsClusteredV3 | STAT1 | score:291, expCount:1, expNums:410, expScores:291, srow:3169120 |
| 27830 | chr5 | 1255478 | 1255478 | cosmic | COSM1060205 | srow:931536 |
| 27830 | chr5 | 1255478 | 1255478 | cosmic | COSM1060204 | srow:931537 |
| 27830 | chr5 | 1255452 | 1255455 | phastConsElements100way | lod=33 | score:340, srow:6893071 |
| 27830 | chr5 | 1255461 | 1255468 | phastConsElements100way | lod=71 | score:415, srow:6893072 |
| 27830 | chr5 | 1255473 | 1255477 | phastConsElements100way | lod=62 | score:402, srow:6893073 |
| 27830 | chr5 | 1255485 | 1255486 | phastConsElements100way | lod=20 | score:290, srow:6893074 |
| 27830 | chr5 | 1255489 | 1255492 | phastConsElements100way | lod=40 | score:359, srow:6893075 |
| 27830 | chr5 | 1255497 | 1255498 | phastConsElements100way | lod=27 | score:320, srow:6893076 |
| 27830 | chr5 | 1255500 | 1255501 | phastConsElements100way | lod=38 | score:354, srow:6893077 |
| 27830 | chr5 | 1255503 | 1255507 | phastConsElements100way | lod=42 | score:363, srow:6893078 |
| 27830 | chr5 | 1255509 | 1255516 | phastConsElements100way | lod=47 | score:375, srow:6893079 |
| 27830 | chr5 | 1255518 | 1255528 | phastConsElements100way | lod=117 | score:465, srow:6893080 |
| 27830 | chr5 | 1253952 | 1256968 | cpgShore | — | values(x.gr)[overs$srow, ]:37005 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27830 | cellmeth_recounts | PrEC: 13, LNCaP: 9, DU145: 5 |  |
| 27830 | cellmeth_diffreps_PrECvsDU145 | A=20, B=1, Length=280, Event=Down, log2FC=-4.32, padj=0.000246010682141716 |  |
| 27830 | cellexp | id=ENSG00000164362, name=TERT, PrEC=1, str=0, LNCaP=272, str=158, DU145=286, str=207 |  |
| 27830 | tcgameth | site:cg00675600, B=0.78, L=0.78, H=0.79 |  |
| 27830 | tcgameth | site:cg13390570, B=0.73, L=0.81, H=0.77 |  |
| 27830 | tcgaexp | gene=TERT, entrez=7015, pos=chr5:1253287-1295162(-), B=1, L=6, M=6, H=9 |  |